U.S. flag

An official website of the United States government

NM_181336.4(LEMD2):c.38T>G (p.Leu13Arg) AND Cataract 46 juvenile-onset

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Nov 1, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000224057.4

Allele description [Variation Report for NM_181336.4(LEMD2):c.38T>G (p.Leu13Arg)]

NM_181336.4(LEMD2):c.38T>G (p.Leu13Arg)

Genes:
LOC129996186:ATAC-STARR-seq lymphoblastoid silent region 17057 [Gene]
LEMD2:LEM domain nuclear envelope protein 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p21.31
Genomic location:
Preferred name:
NM_181336.4(LEMD2):c.38T>G (p.Leu13Arg)
HGVS:
  • NC_000006.12:g.33789079A>C
  • NG_053042.1:g.10196T>G
  • NM_001348709.2:c.-475T>G
  • NM_001348710.2:c.38T>G
  • NM_181336.4:c.38T>GMANE SELECT
  • NP_001335639.1:p.Leu13Arg
  • NP_851853.1:p.Leu13Arg
  • NC_000006.11:g.33756856A>C
  • NM_181336.3:c.38T>G
  • Q8NC56:p.Leu13Arg
Protein change:
L13R; LEU13ARG
Links:
UniProtKB: Q8NC56#VAR_076992; OMIM: 616312.0001; dbSNP: rs878852983
NCBI 1000 Genomes Browser:
rs878852983
Molecular consequence:
  • NM_001348709.2:c.-475T>G - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001348710.2:c.38T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181336.4:c.38T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cataract 46 juvenile-onset
Synonyms:
Cataract Hutterite type; CATARACT 46, JUVENILE-ONSET, WITH OR WITHOUT ARRHYTHMIC CARDIOMYOPATHY
Identifiers:
MONDO: MONDO:0008925; MedGen: C0220721; Orphanet: 91492; OMIM: 212500

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000280597OMIM
no assertion criteria provided
Pathogenic
(Feb 13, 2020)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

SCV000292319Lupski Lab, Baylor-Hopkins CMG, Baylor College of Medicine
criteria provided, single submitter

(Boone et al. (Mol Genet Genomic Med. 2015))
Pathogenic
(Nov 1, 2015)
germlineresearch

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
European Caucasoidgermlineyes178not provided84yesresearch
European Caucasoidgermlineno22not providednot providednot providedyesresearch

Citations

PubMed

Homozygous founder mutation in desmocollin-2 (DSC2) causes arrhythmogenic cardiomyopathy in the Hutterite population.

Gerull B, Kirchner F, Chong JX, Tagoe J, Chandrasekharan K, Strohm O, Waggoner D, Ober C, Duff HJ.

Circ Cardiovasc Genet. 2013 Aug;6(4):327-36. doi: 10.1161/CIRCGENETICS.113.000097. Epub 2013 Jul 17.

PubMed [citation]
PMID:
23863954

Juvenile cataract in Hutterites.

Shokeir MH, Lowry RB.

Am J Med Genet. 1985 Nov;22(3):495-500.

PubMed [citation]
PMID:
4061486
See all PubMed Citations (6)

Details of each submission

From OMIM, SCV000280597.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

In 17 affected members of 4 Lehrerleut Hutterite kindreds segregating autosomal recessive juvenile cataract mapping to 6p22.2-p21.31 (CTRCT46; 212500), Boone et al. (2016) identified homozygosity for a c.38T-G transversion (c.38T-G, NM_181336.3) in the LEMD2 gene, resulting in a leu13-to-arg (L13R) substitution at a conserved residue within the LEM domain. The mutation segregated fully with cataract in a total of 84 individuals from the 4 families, and was not found in the BHCMG, ExAC, 1000 Genomes Project, or Exome Sequencing Project databases. In 2 of the kindreds, 6 patients with juvenile cataract also experienced sudden cardiac death (SCD) that was not associated with a nonsense mutation in the DSC2 gene (Q554X; 125645.0005) that had previously been found in 1 of the sibships with SCD (kindred AR-900, sibship 2) by Gerull et al. (2013), who reported the sibship as 'family L.' Boone et al. (2016) suggested that juvenile cataracts and sudden cardiac death might both be caused by mutation in the LEMD2 gene.

In 19 members of 2 extended Hutterite kindreds who had juvenile cataract with or without arrhythmic cardiomyopathy, one a Lehrerleut family previously studied by Shokeir and Lowry (1985) and Boone et al. (2016) (family 600) and the other a Schmiedeleut family (family 290), Abdelfatah et al. (2019) identified homozygosity for the L13R mutation in the LEMD2 gene. Homozygosity for L13R was also identified in 1 apparently unaffected carrier, a 13-year-old girl without cataract who was believed to be presymptomatic. In live cell counting at different passage numbers (P), patient fibroblasts showed a significantly diminished proliferation rate compared to both an age-matched and a younger control at P2. At P15, in contrast to the controls, patient cells did not proliferate but remained viable in culture, a feature of premature senescence. Staining for beta-galactosidase (see 611458), a marker of cell senescence, revealed a significant increase in the number of cells positive for beta-galactosidase at P6 and P15 in patient cells compared to both controls. Analysis of cell cycle phase distribution showed that a larger proportion of patient cells and the older-age control cells were unable to progress from G1 to S phase, resulting in a prolonged G1 phase, suggesting that mutant LEMD2 may induce G1 arrest. In addition, patient cardiomyocytes showed abnormally shaped nuclei with condensed heterochromatin formation. The authors concluded that LEMD2 may play a role in chromatin remodeling and premature aging.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Lupski Lab, Baylor-Hopkins CMG, Baylor College of Medicine, SCV000292319.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1European Caucasoid17not providedyesresearch PubMed (3)
2European Caucasoid22not providedyesresearch PubMed (3)

Description

This variant co-segregates with juvenile cataracts in 39 family members (including 17 affected individuals [homozygous], 22 obligate carriers) across multiple sibships within a large Hutterite population. A potential association with sudden cardiac death is also observed.

This variant co-segregates with juvenile cataracts in 39 family members (including 17 affected individuals [homozygous], 22 obligate carriers) across multiple sibships within a large Hutterite population. A potential association with sudden cardiac death is also observed.

Description

This variant co-segregates with juvenile cataracts in 39 family members (including 17 affected individuals [homozygous], 22 obligate carriers) across multiple sibships within a large Hutterite population. A potential association with sudden cardiac death is also observed.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes84not providednot provided17not provided8not provided
2germlinenonot providednot providednot provided22not providednot providednot provided

Last Updated: Oct 14, 2023