NM_004937.3(CTNS):c.*1046_*1047dup AND Cystinosis

NM_004937.3(CTNS):c.1046_1047dup AND Cystinosis

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 14, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000261154.5

Allele description [Variation Report for NM_004937.3(CTNS):c.1046_1047dup]

NM_004937.3(CTNS):c.1046_1047dup

Gene:

CTNS:cystinosin, lysosomal cystine transporter [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

17p13.2

Genomic location:

Preferred name:

NM_004937.3(CTNS):c.*1046_*1047dup

HGVS:

NC_000017.11:g.3661415_3661416dup
NG_012489.2:g.29948_29949dup
NG_053154.1:g.12264_12265dup
NM_001031681.3:c.*681_*682dup
NM_001374492.1:c.*681_*682dup
NM_001374493.1:c.*1046_*1047dup
NM_001374494.1:c.*1046_*1047dup
NM_001374495.1:c.*1046_*1047dup
NM_001374496.1:c.*1046_*1047dup
NM_004937.3:c.*1046_*1047dupMANE SELECT
NC_000017.10:g.3564709_3564710dup
NM_004937.2:c.*1046_*1047dupGG

Links:

dbSNP: rs772764926

NCBI 1000 Genomes Browser:

rs772764926

Molecular consequence:

NM_001031681.3:c.*681_*682dup - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001374492.1:c.*681_*682dup - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001374493.1:c.*1046_*1047dup - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001374494.1:c.*1046_*1047dup - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001374495.1:c.*1046_*1047dup - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001374496.1:c.*1046_*1047dup - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_004937.3:c.*1046_*1047dup - 3 prime UTR variant - [Sequence Ontology: SO:0001624]

Condition(s)

Name:: Cystinosis
Synonyms:: Cystine diathesis; Cystine disease; Cystine storage disease; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0016239; MedGen: C4316899

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000402310	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification 20161018)	Uncertain significance (Jun 14, 2016)	germline	clinical testing	ICSL_Variant_Classification_20161018.pdf Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000402310

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification 20161018)

Uncertain significance
(Jun 14, 2016)

germline

clinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000402310.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 9, 2023

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