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NM_000368.5(TSC1):c.2509_2512del (p.Asn837fs) AND multiple conditions

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 27, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000415443.2

Allele description [Variation Report for NM_000368.5(TSC1):c.2509_2512del (p.Asn837fs)]

NM_000368.5(TSC1):c.2509_2512del (p.Asn837fs)

Gene:
TSC1:TSC complex subunit 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
9q34.13
Genomic location:
Preferred name:
NM_000368.5(TSC1):c.2509_2512del (p.Asn837fs)
HGVS:
  • NC_000009.12:g.132900830_132900833del
  • NG_012386.1:g.48803_48806del
  • NM_000368.5:c.2509_2512delMANE SELECT
  • NM_001162426.2:c.2506_2509del
  • NM_001162427.2:c.2356_2359del
  • NM_001362177.2:c.2146_2149del
  • NP_000359.1:p.Asn837fs
  • NP_001155898.1:p.Asn836fs
  • NP_001155899.1:p.Asn786fs
  • NP_001349106.1:p.Asn716fs
  • LRG_486:g.48803_48806del
  • NC_000009.11:g.135776215_135776218del
  • NC_000009.11:g.135776217_135776220del
  • NM_000368.3:c.2509_2512del
  • NM_000368.4:c.2509_2512delAACA
  • NM_000368.5:c.2509_2512del
  • NM_000368.5:c.2509_2512delAACAMANE SELECT
  • p.(Asn837Valfs*11)
Protein change:
N716fs
Links:
Tuberous sclerosis database (TSC1): TSC1_00170; Tuberous sclerosis database (TSC1): TSC1_00233; dbSNP: rs118203707
NCBI 1000 Genomes Browser:
rs118203707
Molecular consequence:
  • NM_000368.5:c.2509_2512del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001162426.2:c.2506_2509del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001162427.2:c.2356_2359del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001362177.2:c.2146_2149del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Seizure
Synonyms:
Seizures
Identifiers:
MedGen: C0036572; Human Phenotype Ontology: HP:0001250
Name:
Multiple renal cysts
Identifiers:
MedGen: C0431718; Human Phenotype Ontology: HP:0005562
Name:
Cortical tubers
Identifiers:
MedGen: C1968959; Human Phenotype Ontology: HP:0009717

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000493038Centre for Mendelian Genomics, University Medical Centre Ljubljana
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Mar 27, 2014) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Centre for Mendelian Genomics, University Medical Centre Ljubljana, SCV000493038.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024