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NM_020297.4(ABCC9):c.3590G>A (p.Arg1197His) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 4, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000428844.3

Allele description [Variation Report for NM_020297.4(ABCC9):c.3590G>A (p.Arg1197His)]

NM_020297.4(ABCC9):c.3590G>A (p.Arg1197His)

Gene:
ABCC9:ATP binding cassette subfamily C member 9 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12p12.1
Genomic location:
Preferred name:
NM_020297.4(ABCC9):c.3590G>A (p.Arg1197His)
HGVS:
  • NC_000012.12:g.21829037C>T
  • NG_012819.1:g.112658G>A
  • NM_001377273.1:c.3590G>A
  • NM_001377274.1:c.2723G>A
  • NM_005691.4:c.3590G>A
  • NM_020297.4:c.3590G>AMANE SELECT
  • NP_001364202.1:p.Arg1197His
  • NP_001364203.1:p.Arg908His
  • NP_005682.2:p.Arg1197His
  • NP_005682.2:p.Arg1197His
  • NP_064693.2:p.Arg1197His
  • LRG_377t1:c.3590G>A
  • LRG_377t2:c.3590G>A
  • LRG_377:g.112658G>A
  • NC_000012.11:g.21981971C>T
  • NM_005691.2:c.3590G>A
  • NM_005691.3:c.3590G>A
  • NM_020297.2:c.3590G>A
Protein change:
R1197H
Links:
dbSNP: rs755156050
NCBI 1000 Genomes Browser:
rs755156050
Molecular consequence:
  • NM_001377273.1:c.3590G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001377274.1:c.2723G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005691.4:c.3590G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_020297.4:c.3590G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

  • RNA polymerase beta'' subunit (chloroplast) [Aegilops umbellulata]
    RNA polymerase beta'' subunit (chloroplast) [Aegilops umbellulata]
    gi|2743175200|gb|XBS33097.1|
    Protein
  • Deinstitutionalization
    Deinstitutionalization
    The practice of caring for individuals in the community, rather than in an institutional environment with resultant effects on the individual, the individual's family, the com...<br/>Year introduced: 1979
    MeSH
  • FIGO Grade 1 Endometrial Mucinous Adenocarcinoma
    FIGO Grade 1 Endometrial Mucinous Adenocarcinoma
    MedGen
  • Mandibular Canal
    Mandibular Canal
    Internal aspect of the mandible from the MENTAL FORAMEN to the mandibular foramen which serves as the conduit for the INFERIOR ALVEOLAR NERVE and the inferior alveolar artery ...<br/>Year introduced: 2022
    MeSH

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000532557GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Oct 4, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000532557.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Has been reported as a variant of uncertain significance in two individuals with ABCC9-related Cantu spectrum disorder (Kortum et al., 2020); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 32622958)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024