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NM_001330260.2(SCN8A):c.2098A>T (p.Ile700Leu) AND not provided

Germline classification:
Benign (2 submissions)
Last evaluated:
Nov 7, 2016
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000435588.13

Allele description [Variation Report for NM_001330260.2(SCN8A):c.2098A>T (p.Ile700Leu)]

NM_001330260.2(SCN8A):c.2098A>T (p.Ile700Leu)

Gene:
SCN8A:sodium voltage-gated channel alpha subunit 8 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q13.13
Genomic location:
Preferred name:
NM_001330260.2(SCN8A):c.2098A>T (p.Ile700Leu)
Other names:
p.I700L:ATA>TTA
HGVS:
  • NC_000012.12:g.51746002A>T
  • NG_021180.3:g.161045A>T
  • NM_001177984.3:c.2098A>T
  • NM_001330260.2:c.2098A>TMANE SELECT
  • NM_001369788.1:c.2098A>T
  • NM_014191.4:c.2098A>T
  • NM_014191.4:c.2098A>T
  • NP_001171455.1:p.Ile700Leu
  • NP_001317189.1:p.Ile700Leu
  • NP_001356717.1:p.Ile700Leu
  • NP_055006.1:p.Ile700Leu
  • LRG_1389t1:c.2098A>T
  • LRG_1389t2:c.2098A>T
  • LRG_1389:g.161045A>T
  • LRG_1389p1:p.Ile700Leu
  • LRG_1389p2:p.Ile700Leu
  • NC_000012.11:g.52139786A>T
  • NM_001177984.1:c.2098A>T
  • NM_014191.2:c.2098A>T
  • NM_014191.3:c.2098A>T
Protein change:
I700L
Links:
dbSNP: rs187153231
NCBI 1000 Genomes Browser:
rs187153231
Molecular consequence:
  • NM_001177984.3:c.2098A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330260.2:c.2098A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369788.1:c.2098A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_014191.4:c.2098A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000511673Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benign
(Nov 7, 2016)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV005228873Breakthrough Genomics, Breakthrough Genomics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benigngermlinenot provided

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providednot provided
not providedgermlinenot providednot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics, SCV000511673.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot provided0.001275not providednot provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005228873.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024