U.S. flag

An official website of the United States government

NM_001379110.1(SLC9A6):c.-60T>C AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Oct 19, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000439846.1

Allele description [Variation Report for NM_001379110.1(SLC9A6):c.-60T>C]

NM_001379110.1(SLC9A6):c.-60T>C

Genes:
LOC130068746:ATAC-STARR-seq lymphoblastoid silent region 21025 [Gene]
SLC9A6:solute carrier family 9 member A6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq26.3
Genomic location:
Preferred name:
NM_001379110.1(SLC9A6):c.-60T>C
HGVS:
  • NC_000023.11:g.135985474T>C
  • NG_017160.1:g.5048T>C
  • NG_017160.2:g.16639T>C
  • NM_001042537.2:c.-29T>C
  • NM_001177651.2:c.-60T>C
  • NM_001330652.1:c.-57+2T>C
  • NM_001330652.2:c.-57+2T>C
  • NM_001379110.1:c.-60T>CMANE SELECT
  • NM_001400909.1:c.-35-150T>C
  • NM_001400910.1:c.-56-129T>C
  • NM_001400911.1:c.-56-129T>C
  • NM_001400912.1:c.-57+2T>C
  • NM_001400913.1:c.-60T>C
  • NM_006359.3:c.-29T>C
  • NC_000023.10:g.135067633T>C
  • NM_006359.2:c.-29T>C
Links:
dbSNP: rs1057520373
NCBI 1000 Genomes Browser:
rs1057520373
Molecular consequence:
  • NM_001042537.2:c.-29T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001177651.2:c.-60T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001379110.1:c.-60T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001400913.1:c.-60T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_006359.3:c.-29T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001400909.1:c.-35-150T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001400910.1:c.-56-129T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001400911.1:c.-56-129T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330652.2:c.-57+2T>C - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001400912.1:c.-57+2T>C - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

Recent activity

Clear Turn Off Turn On
  • rhodopsin [Mesophylla macconnelli]
    rhodopsin [Mesophylla macconnelli]
    gi|1547590549|gb|AZT81926.1|
    Protein
  • Insanity Defense
    Insanity Defense
    A legal concept that an accused is not criminally responsible if, at the time of committing the act, the person was laboring under such a defect of reason from disease of the ...<br/>Year introduced: 1991(1985)
    MeSH

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000514693GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))		Likely benign
(Oct 19, 2015) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000514693.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024