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GRCh37/hg19 17q21.33-23.2(chr17:49076980-58740945)x3 AND See cases

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000448805.4

Allele description [Variation Report for GRCh37/hg19 17q21.33-23.2(chr17:49076980-58740945)x3]

GRCh37/hg19 17q21.33-23.2(chr17:49076980-58740945)x3

Genes:
  • AKAP1:A-kinase anchoring protein 1 [Gene - OMIM - HGNC]
  • CHCT1:CHD1 helical C-terminal domain containing 1 [Gene - HGNC]
  • CUEDC1:CUE domain containing 1 [Gene - OMIM - HGNC]
  • DHX40:DEAH-box helicase 40 [Gene - OMIM - HGNC]
  • DYNLL2-DT:DYNLL2 divergent transcript [Gene - HGNC]
  • HEATR6:HEAT repeat containing 6 [Gene - HGNC]
  • HLF:HLF transcription factor, PAR bZIP family member [Gene - OMIM - HGNC]
  • MKS1:MKS transition zone complex subunit 1 [Gene - OMIM - HGNC]
  • NME1:NME/NM23 nucleoside diphosphate kinase 1 [Gene - OMIM - HGNC]
  • NME2:NME/NM23 nucleoside diphosphate kinase 2 [Gene - OMIM - HGNC]
  • NME1-NME2:NME1-NME2 readthrough [Gene - HGNC]
  • RAD51C:RAD51 paralog C [Gene - OMIM - HGNC]
  • SMG8:SMG8 nonsense mediated mRNA decay factor [Gene - OMIM - HGNC]
  • SUPT4H1:SPT4 homolog, DSIF elongation factor subunit [Gene - OMIM - HGNC]
  • TSPOAP1:TSPO associated protein 1 [Gene - OMIM - HGNC]
  • UTP18:UTP18 small subunit processome component [Gene - OMIM - HGNC]
  • APPBP2:amyloid beta precursor protein binding protein 2 [Gene - OMIM - HGNC]
  • ANKFN1:ankyrin repeat and fibronectin type III domain containing 1 [Gene - HGNC]
  • CA10:carbonic anhydrase 10 [Gene - OMIM - HGNC]
  • CA4:carbonic anhydrase 4 [Gene - OMIM - HGNC]
  • C17orf47:chromosome 17 open reading frame 47 [Gene - HGNC]
  • C17orf67:chromosome 17 open reading frame 67 [Gene - HGNC]
  • CLTC:clathrin heavy chain [Gene - OMIM - HGNC]
  • COIL:coilin [Gene - OMIM - HGNC]
  • COX11:cytochrome c oxidase copper chaperone COX11 [Gene - OMIM - HGNC]
  • DGKE:diacylglycerol kinase epsilon [Gene - OMIM - HGNC]
  • DYNLL2:dynein light chain LC8-type 2 [Gene - OMIM - HGNC]
  • EPX:eosinophil peroxidase [Gene - OMIM - HGNC]
  • GDPD1:glycerophosphodiester phosphodiesterase domain containing 1 [Gene - OMIM - HGNC]
  • HSF5:heat shock transcription factor 5 [Gene - HGNC]
  • KIF2B:kinesin family member 2B [Gene - OMIM - HGNC]
  • LPO:lactoperoxidase [Gene - OMIM - HGNC]
  • LINC02876:long intergenic non-protein coding RNA 2876 [Gene - HGNC]
  • MBTD1:mbt domain containing 1 [Gene - OMIM - HGNC]
  • MIR21:microRNA 21 [Gene - OMIM - HGNC]
  • MRPS23:mitochondrial ribosomal protein S23 [Gene - OMIM - HGNC]
  • MMD:monocyte to macrophage differentiation associated [Gene - OMIM - HGNC]
  • MSI2:musashi RNA binding protein 2 [Gene - OMIM - HGNC]
  • MPO:myeloperoxidase [Gene - OMIM - HGNC]
  • MTMR4:myotubularin related protein 4 [Gene - OMIM - HGNC]
  • NOG:noggin [Gene - OMIM - HGNC]
  • OR4D1:olfactory receptor family 4 subfamily D member 1 [Gene - HGNC]
  • OR4D2:olfactory receptor family 4 subfamily D member 2 [Gene - HGNC]
  • PTRH2:peptidyl-tRNA hydrolase 2 [Gene - OMIM - HGNC]
  • PCTP:phosphatidylcholine transfer protein [Gene - OMIM - HGNC]
  • PRR11:proline rich 11 [Gene - OMIM - HGNC]
  • PPM1D:protein phosphatase, Mg2+/Mn2+ dependent 1D [Gene - OMIM - HGNC]
  • PPM1E:protein phosphatase, Mg2+/Mn2+ dependent 1E [Gene - OMIM - HGNC]
  • RPS6KB1:ribosomal protein S6 kinase B1 [Gene - OMIM - HGNC]
  • RNF43:ring finger protein 43 [Gene - OMIM - HGNC]
  • RNFT1:ring finger protein, transmembrane 1 [Gene - OMIM - HGNC]
  • SEPTIN4:septin 4 [Gene - OMIM - HGNC]
  • SRSF1:serine and arginine rich splicing factor 1 [Gene - OMIM - HGNC]
  • SCPEP1:serine carboxypeptidase 1 [Gene - OMIM - HGNC]
  • SPAG9:sperm associated antigen 9 [Gene - OMIM - HGNC]
  • SKA2:spindle and kinetochore associated complex subunit 2 [Gene - OMIM - HGNC]
  • STXBP4:syntaxin binding protein 4 [Gene - OMIM - HGNC]
  • TOM1L1:target of myb1 like 1 membrane trafficking protein [Gene - OMIM - HGNC]
  • TEX14:testis expressed 14, intercellular bridge forming factor [Gene - OMIM - HGNC]
  • TMEM100:transmembrane protein 100 [Gene - OMIM - HGNC]
  • TRIM25:tripartite motif containing 25 [Gene - OMIM - HGNC]
  • TRIM37:tripartite motif containing 37 [Gene - OMIM - HGNC]
  • TUBD1:tubulin delta 1 [Gene - OMIM - HGNC]
  • USP32:ubiquitin specific peptidase 32 [Gene - OMIM - HGNC]
  • VMP1:vacuole membrane protein 1 [Gene - OMIM - HGNC]
  • VEZF1:vascular endothelial zinc finger 1 [Gene - OMIM - HGNC]
  • YPEL2:yippee like 2 [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
17q21.33-23.2
Genomic location:
Chr17: 49076980 - 58740945 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 17q21.33-23.2(chr17:49076980-58740945)x3
HGVS:
    Links:
    dbVar: nssv13648525; dbVar: nsv2770925
    Observations:
    1

    Condition(s)

    Name:
    See cases [See the Variation display for details]
    Identifiers:

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    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV000499646ISCA Site 6

    See additional submitters

    no assertion criteria provided
    Pathogenicunknownclinical testing

    PubMed (1)
    [See all records that cite this PMID]

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providednot providedyes1not providednot providednot providednot providedclinical testing

    Citations

    PubMed

    Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

    Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

    Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

    PubMed [citation]
    PMID:
    20466091
    PMCID:
    PMC2869000

    Details of each submission

    From ISCA Site 6, SCV000499646.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not provided1not providednot providedclinical testing PubMed (1)
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1unknownyesnot providednot providedDiscovery1not providednot providednot provided

    Last Updated: May 7, 2024