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NM_001035.3(RYR2):c.502C>G (p.Gln168Glu) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Apr 24, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000489848.2

Allele description [Variation Report for NM_001035.3(RYR2):c.502C>G (p.Gln168Glu)]

NM_001035.3(RYR2):c.502C>G (p.Gln168Glu)

Gene:
RYR2:ryanodine receptor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q43
Genomic location:
Preferred name:
NM_001035.3(RYR2):c.502C>G (p.Gln168Glu)
HGVS:
  • NC_000001.11:g.237377361C>G
  • NG_008799.2:g.339960C>G
  • NG_008799.3:g.340178C>G
  • NM_001035.3:c.502C>GMANE SELECT
  • NP_001026.2:p.Gln168Glu
  • LRG_402t1:c.502C>G
  • LRG_402:g.340178C>G
  • LRG_402p1:p.Gln168Glu
  • NC_000001.10:g.237540661C>G
  • NM_001035.2:c.502C>G
Protein change:
Q168E
Links:
dbSNP: rs1085308008
NCBI 1000 Genomes Browser:
rs1085308008
Molecular consequence:
  • NM_001035.3:c.502C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000577824GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Apr 24, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000577824.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

TheQ168E has not been published as a pathogenic variant or as a benign polymorphism to our knowledge. The Q168E variant was not observed in approximately 6,100 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. In addition, the Q168E variant is a semi-conservative amino acid substitution, which may impact secondary protein structure as these residues differ in some properties, and occurs at a position that is conserved across species. Consequently in silico analysis predicts this variant is probably damaging to the protein structure/function. Missense variants in nearby residues (P164S, A165D, R169Q, R176Q) have been reported in the Human Gene Mutation Database in association with arryhtmia (Stenson P et al., 2014), supporting the functional importance of this region of the protein. Furthermore, the Q168E variant is located in one of the three hot-spot regions of the RYR2 gene, where the majority of pathogenic missense variants occur (Medeiros-Domingo A et al., 2009).Therefore, this variant is a strong candidate for a pathogenic variant, however the possibility that it is a benign variant cannot be excluded.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 5, 2022