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NM_004329.3(BMPR1A):c.388T>C (p.Cys130Arg) AND Hereditary cancer-predisposing syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 19, 2012
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000493560.1

Allele description [Variation Report for NM_004329.3(BMPR1A):c.388T>C (p.Cys130Arg)]

NM_004329.3(BMPR1A):c.388T>C (p.Cys130Arg)

Gene:
BMPR1A:bone morphogenetic protein receptor type 1A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q23.2
Genomic location:
Preferred name:
NM_004329.3(BMPR1A):c.388T>C (p.Cys130Arg)
HGVS:
  • NC_000010.11:g.86899848T>C
  • NG_009362.1:g.148210T>C
  • NM_004329.3:c.388T>CMANE SELECT
  • NP_004320.2:p.Cys130Arg
  • NP_004320.2:p.Cys130Arg
  • LRG_298t1:c.388T>C
  • LRG_298:g.148210T>C
  • LRG_298p1:p.Cys130Arg
  • NC_000010.10:g.88659605T>C
  • NM_004329.2:c.388T>C
Protein change:
C130R
Links:
dbSNP: rs1131691168
NCBI 1000 Genomes Browser:
rs1131691168
Molecular consequence:
  • NM_004329.3:c.388T>C - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000581479Ambry Genetics
criteria provided, single submitter

(Ambry Autosomal Dominant and X-Linked criteria (10/2015))
Pathogenic
(Mar 19, 2012)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot provided1not providedclinical testing

Details of each submission

From Ambry Genetics, SCV000581479.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

The p.C130R pathogenic mutation (also known as c.388T>C), located in coding exon 4 of the BMPR1A gene, results from a T to C substitution at nucleotide position 388. The cysteine at codon 130 is replaced by arginine, an amino acid with highly dissimilar properties.In one study, p.C130R was detected in an individual with familial juvenilepolyposis. Themissensemutation targeted acysteineresidue in a highly conservedectodomainof theTGFβreceptor family, and this domain was known to be involved in disulfide bridge 6. Thus, authors concluded that p.C130R was very likely to result in conformational changes with functional consequences (Friedlet al. Hum Genet 2002 Jul;111(1): 108-11; Kirsch et al. NatStructBiol2000 Jun; 7(6): 492-6). In another study, this mutation was detected in a juvenilepolyposispatient and was considered pathogenic due to its location in thecysteine-richregion of the extracellular domain. There were multiple other mutations found in this region indicating hotspot (Howe et al. J Med Genet 2004 Jul; 41(7): 484-91). Based on protein sequence alignment, this amino acid position is highly conserved. In addition, this alteration is predicted to be probably damaging and deleterious byPolyphenand SIFT insilicoanalyses, respectively. Based on the majority of available evidence to date, p.C130R is classified as a pathogenic mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown1not providednot provided1not providednot providednot provided

Last Updated: Dec 24, 2023