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GRCh37/hg19 6q16.1-21(chr6:94202605-109878834)x1 AND See cases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 16, 2014
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000512470.3

Allele description [Variation Report for GRCh37/hg19 6q16.1-21(chr6:94202605-109878834)x1]

GRCh37/hg19 6q16.1-21(chr6:94202605-109878834)x1

Genes:
  • AFG1L:AFG1 like ATPase [Gene - OMIM - HGNC]
  • BEND3:BEN domain containing 3 [Gene - OMIM - HGNC]
  • CD164:CD164 molecule [Gene - OMIM - HGNC]
  • FBXL4:F-box and leucine rich repeat protein 4 [Gene - OMIM - HGNC]
  • GPR63:G protein-coupled receptor 63 [Gene - OMIM - HGNC]
  • HACE1:HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 [Gene - OMIM - HGNC]
  • MMS22L:MMS22 like, DNA repair protein [Gene - OMIM - HGNC]
  • NDUFAF4:NADH:ubiquinone oxidoreductase complex assembly factor 4 [Gene - OMIM - HGNC]
  • PNISR:PNN interacting serine and arginine rich protein [Gene - OMIM - HGNC]
  • POU3F2:POU class 3 homeobox 2 [Gene - OMIM - HGNC]
  • PRDM13:PR/SET domain 13 [Gene - OMIM - HGNC]
  • PRDM1:PR/SET domain 1 [Gene - OMIM - HGNC]
  • SEC63:SEC63 homolog, protein translocation regulator [Gene - OMIM - HGNC]
  • SIM1:SIM bHLH transcription factor 1 [Gene - OMIM - HGNC]
  • SCML4:Scm polycomb group protein like 4 [Gene - HGNC]
  • UFL1:UFM1 specific ligase 1 [Gene - OMIM - HGNC]
  • ASCC3:activating signal cointegrator 1 complex subunit 3 [Gene - OMIM - HGNC]
  • AK9:adenylate kinase 9 [Gene - OMIM - HGNC]
  • ARMC2:armadillo repeat containing 2 [Gene - OMIM - HGNC]
  • ATG5:autophagy related 5 [Gene - OMIM - HGNC]
  • BVES:blood vessel epicardial substance [Gene - OMIM - HGNC]
  • CEP57L1:centrosomal protein 57 like 1 [Gene - HGNC]
  • COQ3:coenzyme Q3, methyltransferase [Gene - OMIM - HGNC]
  • CRYBG1:crystallin beta-gamma domain containing 1 [Gene - OMIM - HGNC]
  • CCNC:cyclin C [Gene - OMIM - HGNC]
  • PDSS2:decaprenyl diphosphate synthase subunit 2 [Gene - OMIM - HGNC]
  • FAXC:failed axon connections homolog, metaxin like GST domain containing [Gene - HGNC]
  • FOXO3:forkhead box O3 [Gene - OMIM - HGNC]
  • FHL5:four and a half LIM domains 5 [Gene - OMIM - HGNC]
  • FUT9:fucosyltransferase 9 [Gene - OMIM - HGNC]
  • GRIK2:glutamate ionotropic receptor kainate type subunit 2 [Gene - OMIM - HGNC]
  • QRSL1:glutaminyl-tRNA amidotransferase subunit QRSL1 [Gene - OMIM - HGNC]
  • KLHL32:kelch like family member 32 [Gene - HGNC]
  • LIN28B:lin-28 homolog B [Gene - OMIM - HGNC]
  • MANEA:mannosidase endo-alpha [Gene - OMIM - HGNC]
  • MCHR2:melanin concentrating hormone receptor 2 [Gene - OMIM - HGNC]
  • MICAL1:microtubule associated monooxygenase, calponin and LIM domain containing 1 [Gene - OMIM - HGNC]
  • MTRES1:mitochondrial transcription rescue factor 1 [Gene - OMIM - HGNC]
  • NR2E1:nuclear receptor subfamily 2 group E member 1 [Gene - OMIM - HGNC]
  • OSTM1:osteoclastogenesis associated transmembrane protein 1 [Gene - OMIM - HGNC]
  • PPIL6:peptidylprolyl isomerase like 6 [Gene - HGNC]
  • POPDC3:popeye domain containing 3 [Gene - OMIM - HGNC]
  • PREP:prolyl endopeptidase [Gene - OMIM - HGNC]
  • RTN4IP1:reticulon 4 interacting protein 1 [Gene - OMIM - HGNC]
  • SESN1:sestrin 1 [Gene - OMIM - HGNC]
  • SOBP:sine oculis binding protein homolog [Gene - OMIM - HGNC]
  • SNX3:sorting nexin 3 [Gene - OMIM - HGNC]
  • SMPD2:sphingomyelin phosphodiesterase 2 [Gene - OMIM - HGNC]
  • TSTD3:thiosulfate sulfurtransferase like domain containing 3 [Gene - HGNC]
  • USP45:ubiquitin specific peptidase 45 [Gene - OMIM - HGNC]
  • ZBTB24:zinc finger and BTB domain containing 24 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
6q16.1-21
Genomic location:
Chr6: 94202605 - 109878834 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 6q16.1-21(chr6:94202605-109878834)x1
HGVS:
NC_000006.11:g.(?_94202605)_(109878834_?)del
Links:
dbVar: nssv13648959; dbVar: nsv2777953
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000585972ISCA site 1

See additional submitters

no assertion criteria provided
Pathogenic
(Jun 16, 2014)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]
PMID:
20466091
PMCID:
PMC2869000

Details of each submission

From ISCA site 1, SCV000585972.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: Sep 1, 2024