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NM_001199138.2(NLRC4):c.2668T>C (p.Cys890Arg) AND multiple conditions

Germline classification:
Benign (1 submission)
Last evaluated:
Jan 11, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000652415.9

Allele description

NM_001199138.2(NLRC4):c.2668T>C (p.Cys890Arg)

Gene:
NLRC4:NLR family CARD domain containing 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p22.3
Genomic location:
Preferred name:
NM_001199138.2(NLRC4):c.2668T>C (p.Cys890Arg)
HGVS:
  • NC_000002.12:g.32235515A>G
  • NG_041780.1:g.35229T>C
  • NM_001199138.2:c.2668T>CMANE SELECT
  • NM_001199139.1:c.2668T>C
  • NM_001302504.1:c.673T>C
  • NM_021209.4:c.2668T>C
  • NP_001186067.1:p.Cys890Arg
  • NP_001186068.1:p.Cys890Arg
  • NP_001289433.1:p.Cys225Arg
  • NP_067032.3:p.Cys890Arg
  • LRG_1317t1:c.2668T>C
  • LRG_1317:g.35229T>C
  • LRG_1317p1:p.Cys890Arg
  • NC_000002.11:g.32460584A>G
Protein change:
C225R
Links:
dbSNP: rs544969923
NCBI 1000 Genomes Browser:
rs544969923
Molecular consequence:
  • NM_001199138.2:c.2668T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001199139.1:c.2668T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302504.1:c.673T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_021209.4:c.2668T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Periodic fever-infantile enterocolitis-autoinflammatory syndrome
Synonyms:
Autoinflammation with infantile enterocolitis
Identifiers:
MONDO: MONDO:0014472; MedGen: C4015067; Orphanet: 436166; OMIM: 616050
Name:
Familial cold autoinflammatory syndrome 4 (FCAS4)
Identifiers:
MONDO: MONDO:0014498; MedGen: C4015276; Orphanet: 47045; OMIM: 616115

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000774285Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Benign
(Jan 11, 2024) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV000774285.7

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 5, 2024