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NM_002191.4(INHA):c.-16C>T AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 6, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000656447.1

Allele description [Variation Report for NM_002191.4(INHA):c.-16C>T]

NM_002191.4(INHA):c.-16C>T

Gene:
INHA:inhibin subunit alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q35
Genomic location:
Preferred name:
NM_002191.4(INHA):c.-16C>T
HGVS:
  • NC_000002.12:g.219572359C>T
  • NG_016977.1:g.4188G>A
  • NG_060933.1:g.453C>T
  • NM_002191.4:c.-16C>TMANE SELECT
  • NC_000002.11:g.220437081C>T
Nucleotide change:
-16C-T (rs35118453)
Links:
OMIM: 147380.0001; dbSNP: rs35118453
NCBI 1000 Genomes Browser:
rs35118453
Molecular consequence:
  • NM_002191.4:c.-16C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000778435OMIM
no assertion criteria provided
Uncertain significance
(Jun 6, 2018)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

INHA promoter polymorphisms are associated with premature ovarian failure.

Harris SE, Chand AL, Winship IM, Gersak K, Nishi Y, Yanase T, Nawata H, Shelling AN.

Mol Hum Reprod. 2005 Nov;11(11):779-84. Epub 2006 Jan 3.

PubMed [citation]
PMID:
16390856

Controversial role of inhibin alpha-subunit gene in the aetiology of premature ovarian failure.

Sundblad V, Chiauzzi VA, Andreone L, Campo S, Charreau EH, Dain L.

Hum Reprod. 2006 May;21(5):1154-60. Epub 2006 Jan 5.

PubMed [citation]
PMID:
16396934
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000778435.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

This variant is classified as a variant of unknown significance because there is conflicting evidence regarding its contribution to premature ovarian failure (POF; see 311360).

In 50 New Zealand patients with premature ovarian failure and 20 from Slovenia, Harris et al. (2005) screened for a -16C-T polymorphism in the promoter region of the INHA gene and observed underrepresentation of the T allele in POF patients compared to controls. Analysis of the INHA promoter region revealed that the imperfect TG repeat element was highly polymorphic, and that the shortest repeat (designated haplotype C) was in linkage disequilibrium with -16T. However, no significant differences in promoter activity were observed between haplotype C and 7 other promoter haplotypes, except for 1 (haplotype B) that showed no promoter activity.

In 61 Argentinian women with POF, 18 of whom had a known autoimmune disorder, and 82 controls, Sundblad et al. (2006) analyzed the INHA gene but could not demonstrate an association between the -16C-T variant and the risk of POF. In addition, studying 46 women below the age of 40 with regular menses, the authors found no significant differences in inhibin A, inhibin B, or pro-alpha-C peptide levels between women who were homozygous for CC at -16 or women who carried CT or TT alleles. Sundblad et al. (2006) concluded that the -16C-T variant may not be associated with POF disease.

In 3 independent POF cohorts, consisting of a total of 611 patients and 1,084 matched controls from Italy and Germany, Corre et al. (2009) found no association between the -16C-T variant and POF.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023