U.S. flag

An official website of the United States government

NM_000404.4(GLB1):c.2007_2010del (p.Asn669fs) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 20, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000666165.1

Allele description [Variation Report for NM_000404.4(GLB1):c.2007_2010del (p.Asn669fs)]

NM_000404.4(GLB1):c.2007_2010del (p.Asn669fs)

Gene:
GLB1:galactosidase beta 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
3p22.3
Genomic location:
Preferred name:
NM_000404.4(GLB1):c.2007_2010del (p.Asn669fs)
HGVS:
  • NC_000003.12:g.32997072_32997075del
  • NG_009005.1:g.105131_105134del
  • NM_000404.4:c.2007_2010delMANE SELECT
  • NM_001079811.3:c.1917_1920del
  • NM_001135602.3:c.1614_1617del
  • NM_001317040.2:c.2151_2154del
  • NM_001393580.1:c.1734+16984_1734+16987del
  • NP_000395.3:p.Asn669fs
  • NP_001073279.2:p.Asn639fs
  • NP_001129074.2:p.Asn538fs
  • NP_001303969.2:p.Asn717fs
  • NC_000003.11:g.33038564_33038567del
  • NM_000404.2:c.2007_2010delCAAA
Protein change:
N538fs
Links:
dbSNP: rs1553604656
NCBI 1000 Genomes Browser:
rs1553604656
Molecular consequence:
  • NM_000404.4:c.2007_2010del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001079811.3:c.1917_1920del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001135602.3:c.1614_1617del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001317040.2:c.2151_2154del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001393580.1:c.1734+16984_1734+16987del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
GM1 gangliosidosis type 2
Synonyms:
GM1-GANGLIOSIDOSIS, TYPE II; GANGLIOSIDOSIS, GENERALIZED GM1, TYPE II; Gangliosidosis, generalized GM1, juvenile type; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009261; MedGen: C0268272; Orphanet: 354; Orphanet: 79256; OMIM: 230600
Name:
GM1 gangliosidosis type 3
Synonyms:
GM1-GANGLIOSIDOSIS, TYPE III; GANGLIOSIDOSIS, GENERALIZED GM1, ADULT TYPE; GANGLIOSIDOSIS, GENERALIZED GM1, CHRONIC TYPE; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009262; MedGen: C0268273; OMIM: 230650
Name:
Mucopolysaccharidosis, MPS-IV-B (MPS4B)
Synonyms:
MPS IVB; Morquio syndrome B; MPS 4B; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009660; MedGen: C0086652; Orphanet: 582; OMIM: 253010
Name:
Infantile GM1 gangliosidosis
Synonyms:
Gangliosidosis, Generalized GM1, Type 1; GM1 gangliosidosis type 1; GM1-gangliosidosis, type I; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009260; MedGen: C0268271; Orphanet: 354; OMIM: 230500

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000790412Counsyl
criteria provided, single submitter

(Counsyl Autosomal Recessive and X-Linked Classification Criteria (2018))		Uncertain significance
(Mar 20, 2017) 		unknownclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Counsyl, SCV000790412.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 29, 2023