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NM_003900.5(SQSTM1):c.876C>T (p.Asp292=) AND not provided

Germline classification:
Benign (2 submissions)
Last evaluated:
Aug 13, 2018
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000713546.5

Allele description [Variation Report for NM_003900.5(SQSTM1):c.876C>T (p.Asp292=)]

NM_003900.5(SQSTM1):c.876C>T (p.Asp292=)

Gene:
SQSTM1:sequestosome 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q35.3
Genomic location:
Preferred name:
NM_003900.5(SQSTM1):c.876C>T (p.Asp292=)
HGVS:
  • NC_000005.10:g.179833153C>T
  • NG_011342.1:g.31766C>T
  • NM_001142298.2:c.624C>T
  • NM_001142299.2:c.624C>T
  • NM_003900.5:c.876C>TMANE SELECT
  • NP_001135770.1:p.Asp208=
  • NP_001135771.1:p.Asp208=
  • NP_003891.1:p.Asp292=
  • NC_000005.9:g.179260153C>T
  • NM_001142298.1:c.624C>T
  • NM_003900.4:c.876C>T
Links:
dbSNP: rs4935
NCBI 1000 Genomes Browser:
rs4935
Molecular consequence:
  • NM_001142298.2:c.624C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142299.2:c.624C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_003900.5:c.876C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000844168Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)		Benign
(Nov 17, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001838756GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Benign
(Aug 13, 2018) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Athena Diagnostics, SCV000844168.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV001838756.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024