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NM_001099271.2(POC5):c.304_305del (p.Thr101_Asp102insTer) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 4, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000754800.1

Allele description [Variation Report for NM_001099271.2(POC5):c.304_305del (p.Thr101_Asp102insTer)]

NM_001099271.2(POC5):c.304_305del (p.Thr101_Asp102insTer)

Gene:
POC5:POC5 centriolar protein [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
5q13.3
Genomic location:
Preferred name:
NM_001099271.2(POC5):c.304_305del (p.Thr101_Asp102insTer)
HGVS:
  • NC_000005.10:g.75705707_75705708del
  • NM_001099271.2:c.304_305delMANE SELECT
  • NM_152408.3:c.229_230del
  • NP_001092741.1:p.Thr101_Asp102insTer
  • NP_689621.2:p.Thr76_Asp77insTer
  • NC_000005.9:g.75001532_75001533del
  • NM_001099271.1:c.304_305del
  • NM_001099271.1:c.304_305delGA
Links:
OMIM: 617880.0001; dbSNP: rs1561480377
NCBI 1000 Genomes Browser:
rs1561480377
Molecular consequence:
  • NM_001099271.2:c.304_305del - nonsense - [Sequence Ontology: SO:0001587]
  • NM_152408.3:c.229_230del - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000882685OMIM
no assertion criteria provided
Uncertain significance
(Feb 4, 2019)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Whole-exome sequencing reveals POC5 as a novel gene associated with autosomal recessive retinitis pigmentosa.

Weisz Hubshman M, Broekman S, van Wijk E, Cremers F, Abu-Diab A, Khateb S, Tzur S, Lagovsky I, Smirin-Yosef P, Sharon D, Haer-Wigman L, Banin E, Basel-Vanagaite L, de Vrieze E.

Hum Mol Genet. 2018 Feb 15;27(4):614-624. doi: 10.1093/hmg/ddx428.

PubMed [citation]
PMID:
29272404

Details of each submission

From OMIM, SCV000882685.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

This variant is classified as a variant of unknown significance because its contribution to retinitis pigmentosa (RP; see 268000) has not been confirmed.

In a 19-year-old woman of Moroccan/Yemenite Jewish descent with short stature, severe microcephaly, and RP, who was negative for chromosomal microdeletions/duplications and Moroccan and Yemenite Jewish RP founder mutations, Weisz Hubshman et al. (2018) identified homozygosity for a 2-bp deletion (c.304_305delGA, NM_0010992271) in the POC5 gene, resulting in a premature termination codon (asp102 to ter, D102X). Her unaffected parents and brother were heterozygous for the mutation. The proband wore glasses from age 6 years due to myopia, and later a mild central posterior subcapsular/polar cataract was detected. At age 14, she was diagnosed with RP, at which time full-field electroretinography revealed nondetectable rod responses with cone responses reduced but still present. Visual acuity at age 19 was 20/40, and visual fields were constricted to 10 to 20 degrees from fixation. Funduscopy showed salt and pepper-like hyperpigmentation in the midperiphery, with early bone spicule-like pigmentary changes, mild optic disc pallor, and mild attenuation of retinal vessels. Fundus autofluorescence images showed hyperfluorescence in the macular region with hypofluorescent areas throughout the more peripheral retina. Optical coherence tomography scans showed thinning and loss of the photoreceptor outer nuclear layer in extrafoveal regions. The proband also experienced recurrent episodes of glomerulonephritis, with focal segmental glomerulonephritis on 1 biopsy and immunoglobulin A nephropathy on another. In addition, she had recurrent episodes of muscle pain/cramps, associated with elevated creatine phosphokinase.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 26, 2024