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NM_020297.4(ABCC9):c.2848A>T (p.Met950Leu) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 25, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000756945.8

Allele description [Variation Report for NM_020297.4(ABCC9):c.2848A>T (p.Met950Leu)]

NM_020297.4(ABCC9):c.2848A>T (p.Met950Leu)

Gene:
ABCC9:ATP binding cassette subfamily C member 9 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12p12.1
Genomic location:
Preferred name:
NM_020297.4(ABCC9):c.2848A>T (p.Met950Leu)
HGVS:
  • NC_000012.12:g.21848168T>A
  • NG_012819.1:g.93527A>T
  • NM_001377273.1:c.2848A>T
  • NM_001377274.1:c.1981A>T
  • NM_005691.4:c.2848A>T
  • NM_020297.4:c.2848A>TMANE SELECT
  • NP_001364202.1:p.Met950Leu
  • NP_001364203.1:p.Met661Leu
  • NP_005682.2:p.Met950Leu
  • NP_005682.2:p.Met950Leu
  • NP_064693.2:p.Met950Leu
  • LRG_377:g.93527A>T
  • NC_000012.11:g.22001102T>A
  • NM_005691.3:c.2848A>T
Protein change:
M661L
Links:
dbSNP: rs1448325219
NCBI 1000 Genomes Browser:
rs1448325219
Molecular consequence:
  • NM_001377273.1:c.2848A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001377274.1:c.1981A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005691.4:c.2848A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_020297.4:c.2848A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000884938ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process)		Uncertain significance
(Mar 25, 2018) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV000884938.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The ABCC9 c.2848A>T; p.Met950Leu variant, to our knowledge, is not reported in the medical literature, gene specific variation databases, nor has it been previously identified by our laboratory. This variant is absent from the general population databases (1000 Genomes Project, Exome Variant Server, Genome Aggregation Database), indicating it is not a common polymorphism. The methionine at position 950 is weakly conserved, considering 12 species, and computational analyses of the effects of the p.Met950Leu variant on protein structure and function do not predict a deleterious effect (SIFT: tolerated , PolyPhen-2: benign). Based on the available information, the clinical significance of the p.Met950Leu variant cannot be determined with certainty.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 4, 2023