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NM_004183.4(BEST1):c.86A>G (p.Tyr29Cys) AND Vitelliform macular dystrophy 2

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Dec 30, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000761419.2

Allele description [Variation Report for NM_004183.4(BEST1):c.86A>G (p.Tyr29Cys)]

NM_004183.4(BEST1):c.86A>G (p.Tyr29Cys)

Gene:
BEST1:bestrophin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q12.3
Genomic location:
Preferred name:
NM_004183.4(BEST1):c.86A>G (p.Tyr29Cys)
HGVS:
  • NC_000011.10:g.61951892A>G
  • NG_009033.1:g.7009A>G
  • NM_001139443.2:c.-29+1465A>G
  • NM_001300786.2:c.-29+1465A>G
  • NM_001300787.2:c.-29+1465A>G
  • NM_001363592.1:c.86A>G
  • NM_004183.4:c.86A>GMANE SELECT
  • NP_001350521.1:p.Tyr29Cys
  • NP_004174.1:p.Tyr29Cys
  • NC_000011.9:g.61719364A>G
  • NM_004183.3:c.86A>G
  • NR_134580.2:n.199A>G
Protein change:
Y29C
Links:
dbSNP: rs1565382549
NCBI 1000 Genomes Browser:
rs1565382549
Molecular consequence:
  • NM_001139443.2:c.-29+1465A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001300786.2:c.-29+1465A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001300787.2:c.-29+1465A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001363592.1:c.86A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004183.4:c.86A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_134580.2:n.199A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Vitelliform macular dystrophy 2
Synonyms:
VITELLIFORM MACULAR DYSTROPHY, EARLY-ONSET; VITELLIFORM MACULAR DYSTROPHY, JUVENILE-ONSET; Best disease; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007931; MedGen: C2745945; Orphanet: 1243; OMIM: 153700

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000891481Department Of Genetics, Sultan Qaboos University Hospital, Sultan Qaboos University
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Dec 30, 2017) 		unknowncuration

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedcuration

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Department Of Genetics, Sultan Qaboos University Hospital, Sultan Qaboos University, SCV000891481.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcuration PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 20, 2024