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NM_012208.4(HARS2):c.137T>A (p.Leu46Gln) AND Perrault syndrome 2

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
May 20, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000782170.2

Allele description [Variation Report for NM_012208.4(HARS2):c.137T>A (p.Leu46Gln)]

NM_012208.4(HARS2):c.137T>A (p.Leu46Gln)

Gene:
HARS2:histidyl-tRNA synthetase 2, mitochondrial [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q31.3
Genomic location:
Preferred name:
NM_012208.4(HARS2):c.137T>A (p.Leu46Gln)
HGVS:
  • NC_000005.10:g.140693619T>A
  • NG_021415.1:g.7187T>A
  • NG_032158.1:g.2768A>T
  • NM_001278731.2:c.109-316T>A
  • NM_001278732.2:c.-74T>A
  • NM_001363535.2:c.155T>A
  • NM_001363536.2:c.-74T>A
  • NM_012208.4:c.137T>AMANE SELECT
  • NP_001350464.1:p.Leu52Gln
  • NP_036340.1:p.Leu46Gln
  • LRG_1376t1:c.137T>A
  • LRG_1374:g.2768A>T
  • LRG_1376:g.7187T>A
  • LRG_1376p1:p.Leu46Gln
  • NC_000005.9:g.140073204T>A
  • NM_012208.3:c.137T>A
Protein change:
L46Q
Links:
dbSNP: rs1562047621
NCBI 1000 Genomes Browser:
rs1562047621
Molecular consequence:
  • NM_001278732.2:c.-74T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001363536.2:c.-74T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001278731.2:c.109-316T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001363535.2:c.155T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_012208.4:c.137T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Perrault syndrome 2 (PRLTS2)
Identifiers:
MONDO: MONDO:0013972; MedGen: C3554105; Orphanet: 2855; OMIM: 614926

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000920638Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet
no assertion criteria provided
Likely pathogenic
(May 20, 2019)
paternalclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedpaternalyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet, SCV000920638.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Variant detected as compound heterozygous, together with c.259C>T in a female with perrault syndrome

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1paternalyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 3, 2023