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NM_024426.6(WT1):c.1216A>G (p.Arg406Gly) AND Nephrotic syndrome, type 4

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 21, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000786950.3

Allele description [Variation Report for NM_024426.6(WT1):c.1216A>G (p.Arg406Gly)]

NM_024426.6(WT1):c.1216A>G (p.Arg406Gly)

Gene:
WT1:WT1 transcription factor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p13
Genomic location:
Preferred name:
NM_024426.6(WT1):c.1216A>G (p.Arg406Gly)
HGVS:
  • NC_000011.10:g.32396305T>C
  • NG_009272.1:g.44237A>G
  • NM_000378.6:c.1165A>G
  • NM_001198551.2:c.565A>G
  • NM_001198552.2:c.514A>G
  • NM_001367854.1:c.28A>G
  • NM_001407044.1:c.1210A>G
  • NM_001407045.1:c.1165A>G
  • NM_001407046.1:c.1216A>G
  • NM_001407047.1:c.1093A>G
  • NM_001407048.1:c.1165A>G
  • NM_001407049.1:c.1165A>G
  • NM_001407050.1:c.1042A>G
  • NM_001407051.1:c.454A>G
  • NM_024424.5:c.1216A>G
  • NM_024425.2:c.1150A>G
  • NM_024426.6:c.1216A>GMANE SELECT
  • NP_000369.4:p.Arg389Gly
  • NP_001185480.1:p.Arg189Gly
  • NP_001185480.1:p.Arg189Gly
  • NP_001185481.1:p.Arg172Gly
  • NP_001354783.1:p.Arg10Gly
  • NP_001393973.1:p.Arg404Gly
  • NP_001393974.1:p.Arg389Gly
  • NP_001393975.1:p.Arg406Gly
  • NP_001393976.1:p.Arg365Gly
  • NP_001393977.1:p.Arg389Gly
  • NP_001393978.1:p.Arg389Gly
  • NP_001393979.1:p.Arg348Gly
  • NP_001393980.1:p.Arg152Gly
  • NP_077742.3:p.Arg406Gly
  • NP_077743.2:p.Arg384Gly
  • NP_077744.3:p.Arg401Gly
  • NP_077744.4:p.Arg406Gly
  • LRG_525t1:c.1201A>G
  • LRG_525t2:c.565A>G
  • LRG_525:g.44237A>G
  • LRG_525p1:p.Arg401Gly
  • LRG_525p2:p.Arg189Gly
  • NC_000011.9:g.32417851T>C
  • NM_001198551.1:c.565A>G
  • NM_024426.3:c.1201A>G
  • NM_024426.4:c.1201A>G
  • NR_160306.1:n.1548A>G
  • NR_176266.1:n.1497A>G
Protein change:
R10G
Links:
dbSNP: rs1590338690
NCBI 1000 Genomes Browser:
rs1590338690
Molecular consequence:
  • NM_000378.6:c.1165A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001198551.2:c.565A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001198552.2:c.514A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001367854.1:c.28A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407044.1:c.1210A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407045.1:c.1165A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407046.1:c.1216A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407047.1:c.1093A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407048.1:c.1165A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407049.1:c.1165A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407050.1:c.1042A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407051.1:c.454A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024424.5:c.1216A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024425.2:c.1150A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024426.6:c.1216A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_160306.1:n.1548A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Nephrotic syndrome, type 4 (NPHS4)
Synonyms:
Familial mesangial sclerosis; Nephrotic syndrome, early onset with diffuse mesangial sclerosis
Identifiers:
MONDO: MONDO:0009733; MedGen: C3151568; Orphanet: 656; OMIM: 256370

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000925855Bioscientia Institut fuer Medizinische Diagnostik GmbH, Sonic Healthcare
no assertion criteria provided
Uncertain significance
(Feb 21, 2019)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Bioscientia Institut fuer Medizinische Diagnostik GmbH, Sonic Healthcare, SCV000925855.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 4, 2023