NM_020442.6(VARS2):c.104A>G (p.His35Arg) AND Combined oxidative phosphorylation defect type 20

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Apr 27, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000791151.3

Allele description [Variation Report for NM_020442.6(VARS2):c.104A>G (p.His35Arg)]

NM_020442.6(VARS2):c.104A>G (p.His35Arg)

Gene:

VARS2:valyl-tRNA synthetase 2, mitochondrial [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

6p21.33

Genomic location:

Preferred name:

NM_020442.6(VARS2):c.104A>G (p.His35Arg)

HGVS:

NC_000006.12:g.30914940A>G
NG_034224.1:g.5733A>G
NM_001167733.3:c.-219-216A>G
NM_001167734.2:c.194A>G
NM_020442.6:c.104A>GMANE SELECT
NP_001161206.1:p.His65Arg
NP_001161206.1:p.His65Arg
NP_065175.4:p.His35Arg
NC_000006.11:g.30882717A>G
NM_001167734.1:c.194A>G

Protein change:

H35R

Links:

dbSNP: rs199534441

NCBI 1000 Genomes Browser:

rs199534441

Molecular consequence:

NM_001167733.3:c.-219-216A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001167734.2:c.194A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_020442.6:c.104A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Combined oxidative phosphorylation defect type 20
Synonyms:: Combined oxidative phosphorylation deficiency 20
Identifiers:: MONDO: MONDO:0014397; MedGen: C4014660; Orphanet: 420728; OMIM: 615917

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000930425	Genomic Research Center, Shahid Beheshti University of Medical Sciences	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Apr 27, 2019)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000930425

Genomic Research Center, Shahid Beheshti University of Medical Sciences

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Apr 27, 2019)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genomic Research Center, Shahid Beheshti University of Medical Sciences, SCV000930425.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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