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GRCh37/hg19 21q22.3(chr21:43756585-46240105)x1 AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 19, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000849014.2

Allele description [Variation Report for GRCh37/hg19 21q22.3(chr21:43756585-46240105)x1]

GRCh37/hg19 21q22.3(chr21:43756585-46240105)x1

Genes:
  • AGPAT3:1-acylglycerol-3-phosphate O-acyltransferase 3 [Gene - OMIM - HGNC]
  • DNMT3L:DNA methyltransferase 3 like [Gene - OMIM - HGNC]
  • NDUFV3:NADH:ubiquinone oxidoreductase subunit V3 [Gene - OMIM - HGNC]
  • PKNOX1:PBX/knotted 1 homeobox 1 [Gene - OMIM - HGNC]
  • PWP2:PWP2 small subunit processome component [Gene - OMIM - HGNC]
  • U2AF1:U2 small nuclear RNA auxiliary factor 1 [Gene - OMIM - HGNC]
  • WDR4:WD repeat domain 4 [Gene - OMIM - HGNC]
  • AIRE:autoimmune regulator [Gene - OMIM - HGNC]
  • CFAP410:cilia and flagella associated protein 410 [Gene - OMIM - HGNC]
  • CRYAA:crystallin alpha A [Gene - OMIM - HGNC]
  • CBS:cystathionine beta-synthase [Gene - OMIM - HGNC]
  • CSTB:cystatin B [Gene - OMIM - HGNC]
  • GATD3:glutamine amidotransferase class 1 domain containing 3 [Gene - OMIM - HGNC]
  • HSF2BP:heat shock transcription factor 2 binding protein [Gene - OMIM - HGNC]
  • ICOSLG:inducible T cell costimulator ligand [Gene - OMIM - HGNC]
  • KRTAP10-10:keratin associated protein 10-10 [Gene - HGNC]
  • KRTAP10-11:keratin associated protein 10-11 [Gene - HGNC]
  • KRTAP10-12:keratin associated protein 10-12 [Gene - HGNC]
  • KRTAP10-1:keratin associated protein 10-1 [Gene - HGNC]
  • KRTAP10-2:keratin associated protein 10-2 [Gene - HGNC]
  • KRTAP10-3:keratin associated protein 10-3 [Gene - HGNC]
  • KRTAP10-4:keratin associated protein 10-4 [Gene - HGNC]
  • KRTAP10-5:keratin associated protein 10-5 [Gene - HGNC]
  • KRTAP10-6:keratin associated protein 10-6 [Gene - HGNC]
  • KRTAP10-7:keratin associated protein 10-7 [Gene - HGNC]
  • KRTAP10-8:keratin associated protein 10-8 [Gene - HGNC]
  • KRTAP10-9:keratin associated protein 10-9 [Gene - HGNC]
  • KRTAP12-1:keratin associated protein 12-1 [Gene - HGNC]
  • KRTAP12-2:keratin associated protein 12-2 [Gene - HGNC]
  • KRTAP12-3:keratin associated protein 12-3 [Gene - HGNC]
  • KRTAP12-4:keratin associated protein 12-4 [Gene - HGNC]
  • LRRC3:leucine rich repeat containing 3 [Gene - OMIM - HGNC]
  • PDE9A:phosphodiesterase 9A [Gene - OMIM - HGNC]
  • PFKL:phosphofructokinase, liver type [Gene - OMIM - HGNC]
  • PDXK:pyridoxal kinase [Gene - OMIM - HGNC]
  • RSPH1:radial spoke head component 1 [Gene - OMIM - HGNC]
  • RRP1:ribosomal RNA processing 1 [Gene - OMIM - HGNC]
  • RRP1B:ribosomal RNA processing 1B [Gene - OMIM - HGNC]
  • SIK1:salt inducible kinase 1 [Gene - OMIM - HGNC]
  • SUMO3:small ubiquitin like modifier 3 [Gene - OMIM - HGNC]
  • SLC37A1:solute carrier family 37 member 1 [Gene - OMIM - HGNC]
  • TSPEAR:thrombospondin type laminin G domain and EAR repeats [Gene - OMIM - HGNC]
  • TRAPPC10:trafficking protein particle complex subunit 10 [Gene - OMIM - HGNC]
  • TRPM2:transient receptor potential cation channel subfamily M member 2 [Gene - OMIM - HGNC]
  • TMPRSS3:transmembrane serine protease 3 [Gene - OMIM - HGNC]
  • TFF1:trefoil factor 1 [Gene - OMIM - HGNC]
  • TFF2:trefoil factor 2 [Gene - OMIM - HGNC]
  • UBASH3A:ubiquitin associated and SH3 domain containing A [Gene - OMIM - HGNC]
  • UBE2G2:ubiquitin conjugating enzyme E2 G2 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
21q22.3
Genomic location:
Chr21: 43756585 - 46240105 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 21q22.3(chr21:43756585-46240105)x1
HGVS:
NC_000021.8:g.(?_43756585)_(46240105_?)del

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000991156Bionano Laboratories
no assertion criteria provided
Pathogenic
(Jun 19, 2018)
unknownclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Bionano Laboratories, SCV000991156.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providedBuccalnot providednot providednot providednot providednot provided

Last Updated: Dec 11, 2022