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NM_004100.5(EYA4):c.347C>T (p.Ala116Val) AND multiple conditions

Germline classification:
Likely benign (1 submission)
Last evaluated:
Apr 9, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000853008.1

Allele description [Variation Report for NM_004100.5(EYA4):c.347C>T (p.Ala116Val)]

NM_004100.5(EYA4):c.347C>T (p.Ala116Val)

Gene:
EYA4:EYA transcriptional coactivator and phosphatase 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q23.2
Genomic location:
Preferred name:
NM_004100.5(EYA4):c.347C>T (p.Ala116Val)
HGVS:
  • NC_000006.12:g.133456625C>T
  • NG_011596.2:g.220269C>T
  • NM_001301012.2:c.209-4489C>T
  • NM_001301013.2:c.347C>T
  • NM_001370458.1:c.278C>T
  • NM_001370459.1:c.209-4489C>T
  • NM_004100.5:c.347C>TMANE SELECT
  • NM_172103.4:c.278C>T
  • NM_172105.4:c.347C>T
  • NP_001287942.1:p.Ala116Val
  • NP_001357387.1:p.Ala93Val
  • NP_004091.3:p.Ala116Val
  • NP_742101.2:p.Ala93Val
  • NP_742103.1:p.Ala116Val
  • NP_742103.1:p.Ala116Val
  • LRG_418t1:c.347C>T
  • LRG_418:g.220269C>T
  • LRG_418p1:p.Ala116Val
  • NC_000006.11:g.133777763C>T
  • NM_004100.4:c.347C>T
  • NM_172105.3:c.347C>T
Protein change:
A116V
Links:
dbSNP: rs747223436
NCBI 1000 Genomes Browser:
rs747223436
Molecular consequence:
  • NM_001301012.2:c.209-4489C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001370459.1:c.209-4489C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301013.2:c.347C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370458.1:c.278C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004100.5:c.347C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172103.4:c.278C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172105.4:c.347C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Name:
Congestive heart failure
Identifiers:
MONDO: MONDO:0005009; MedGen: C0018802; Human Phenotype Ontology: HP:0001635
Name:
Ventricular tachycardia
Identifiers:
EFO: EFO_0005306; MONDO: MONDO:0005477; MedGen: C0042514; Human Phenotype Ontology: HP:0004756

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000995764Center for Advanced Laboratory Medicine, UC San Diego Health, University of California San Diego
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benign
(Apr 9, 2019)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Advanced Laboratory Medicine, UC San Diego Health, University of California San Diego, SCV000995764.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

Last Updated: Sep 29, 2024