NM_017774.3(CDKAL1):c.1549-5TA[3] AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jul 17, 2018
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000937861.4

Allele description [Variation Report for NM_017774.3(CDKAL1):c.1549-5TA[3]]

NM_017774.3(CDKAL1):c.1549-5TA[3]

Genes:

CDKAL1:CDK5 regulatory subunit associated protein 1 like 1 [Gene - OMIM - HGNC]
LOC126859616:MED14-independent group 3 enhancer GRCh37_chr6:21230452-21231651 [Gene]

Variant type:

Microsatellite

Cytogenetic location:

6p22.3

Genomic location:

Preferred name:

NM_017774.3(CDKAL1):c.1549-5TA[3]

HGVS:

NC_000006.12:g.21230843TA[3]
NC_000006.12:g.21230845_21230846dup
NG_021195.2:g.701387TA[3]
NM_017774.3:c.1549-5TA[3]MANE SELECT
NC_000006.11:g.21231074TA[3]
NM_017774.3:c.1549-3_1549-2dupTAMANE SELECT

Links:

dbSNP: rs544817697

NCBI 1000 Genomes Browser:

rs544817697

Molecular consequence:

NM_017774.3:c.1549-5TA[3] - splice acceptor variant - [Sequence Ontology: SO:0001574]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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MAG: Cyanobacteria bacterium J007 k99_96473, whole genome shotgun sequence
MAG: Cyanobacteria bacterium J007 k99_96473, whole genome shotgun sequence
gi|1498342639|gb|RFFV01000014.1||gn :RFFV01|k99_96473

Nucleotide
Dendrobates auratus cytochrome b gene, mitochondrial gene encoding mitochondrial...
Dendrobates auratus cytochrome b gene, mitochondrial gene encoding mitochondrial protein, partial cds
gi|4931746|gb|AF120012.1|

Nucleotide
Pemphigus populitransversus replicate 4
Pemphigus populitransversus replicate 4

biosample

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001083655	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Jul 17, 2018)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001083655

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Jul 17, 2018)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001083655.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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