NM_020774.4(MIB1):c.230-6T>C AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: Dec 31, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000981487.5

Allele description [Variation Report for NM_020774.4(MIB1):c.230-6T>C]

NM_020774.4(MIB1):c.230-6T>C

Gene:

MIB1:MIB E3 ubiquitin protein ligase 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

18q11.2

Genomic location:

Preferred name:

NM_020774.4(MIB1):c.230-6T>C

HGVS:

NC_000018.10:g.21765766T>C
NG_033272.2:g.65810T>C
NM_020774.4:c.230-6T>CMANE SELECT
LRG_759t1:c.230-6T>C
LRG_759:g.65810T>C
NC_000018.9:g.19345727T>C
NM_020774.3:c.230-6T>C

Links:

dbSNP: rs1555689079

NCBI 1000 Genomes Browser:

rs1555689079

Molecular consequence:

NM_020774.4:c.230-6T>C - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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Homo sapiens protocadherin gamma subfamily B, 6 (PCDHGB6), transcript variant 2,...
Homo sapiens protocadherin gamma subfamily B, 6 (PCDHGB6), transcript variant 2, mRNA
gi|14270501|ref|NM_032100.1|

Nucleotide
Homo sapiens protocadherin gamma subfamily B, 6 (PCDHGB6), transcript variant 1,...
Homo sapiens protocadherin gamma subfamily B, 6 (PCDHGB6), transcript variant 1, mRNA
gi|1995060294|ref|NM_018926.3|

Nucleotide
amyloid beta precursor protein binding family B member 2 isoform X9 [Mus musculu...
amyloid beta precursor protein binding family B member 2 isoform X9 [Mus musculus]
gi|1907160022|ref|XP_036020641.1|

Protein
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4...
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930535E05 product:hypothetical RhoGAP domain/Rho GTPase-activating proteins domain profile/Rho GTPase activation protein containing protein, full insert sequence
gi|74215684|dbj|AK132965.1|

Nucleotide
PREDICTED: Homo sapiens YTH N6-methyladenosine RNA binding protein C2 (YTHDC2), ...
PREDICTED: Homo sapiens YTH N6-methyladenosine RNA binding protein C2 (YTHDC2), transcript variant X7, mRNA
gi|2217356798|ref|XM_011543586.3|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001129460	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Dec 31, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001129460

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Dec 31, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001129460.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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