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NM_000503.6(EYA1):c.840C>A (p.Ile280=) AND not provided

Germline classification:
Benign/Likely benign (5 submissions)
Last evaluated:
Jan 1, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000991975.12

Allele description

NM_000503.6(EYA1):c.840C>A (p.Ile280=)

Gene:
EYA1:EYA transcriptional coactivator and phosphatase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q13.3
Genomic location:
Preferred name:
NM_000503.6(EYA1):c.840C>A (p.Ile280=)
HGVS:
  • NC_000008.11:g.71271884G>T
  • NG_011735.3:g.281247C>A
  • NM_000503.6:c.840C>AMANE SELECT
  • NM_001288574.2:c.822C>A
  • NM_001288575.2:c.474C>A
  • NM_001370333.1:c.927C>A
  • NM_001370334.1:c.840C>A
  • NM_001370335.1:c.840C>A
  • NM_001370336.1:c.909C>A
  • NM_172058.4:c.840C>A
  • NM_172059.5:c.912C>A
  • NP_000494.2:p.Ile280=
  • NP_001275503.1:p.Ile274=
  • NP_001275504.1:p.Ile158=
  • NP_001357262.1:p.Ile309=
  • NP_001357263.1:p.Ile280=
  • NP_001357264.1:p.Ile280=
  • NP_001357265.1:p.Ile303=
  • NP_742055.1:p.Ile280=
  • NP_742056.2:p.Ile304=
  • NC_000008.10:g.72184119G>T
  • NG_011735.2:g.95349C>A
  • NM_000503.4:c.840C>A
  • NM_000503.5:c.840C>A
  • NM_172058.2:c.840C>A
  • NM_172058.3:c.840C>A
  • p.Ile280Ile
Links:
dbSNP: rs55972891
NCBI 1000 Genomes Browser:
rs55972891
Molecular consequence:
  • NM_000503.6:c.840C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001288574.2:c.822C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001288575.2:c.474C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001370333.1:c.927C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001370334.1:c.840C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001370335.1:c.840C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001370336.1:c.909C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_172058.4:c.840C>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_172059.5:c.912C>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000724162GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Apr 28, 2021)
germlineclinical testing

Citation Link,

SCV001143890Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Benign
(Nov 27, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001930741Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV001966636Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV004155935CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Jan 1, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From GeneDx, SCV000724162.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Athena Diagnostics, SCV001143890.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001930741.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001966636.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004155935.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided

Description

EYA1: BP4, BP7, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

Last Updated: May 7, 2024