NM_004168.4(SDHA):c.13C>T (p.Arg5Trp) AND Hereditary cancer-predisposing syndrome

This record was updated by the submitter. Please see the current version.

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Feb 27, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001011369.3

Allele description

NM_004168.4(SDHA):c.13C>T (p.Arg5Trp)

Gene:

SDHA:succinate dehydrogenase complex flavoprotein subunit A [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

5p15.33

Genomic location:

Preferred name:

NM_004168.4(SDHA):c.13C>T (p.Arg5Trp)

HGVS:

NC_000005.10:g.218368C>T
NG_012339.1:g.5128C>T
NG_033064.1:g.4815G>A
NM_001294332.2:c.13C>T
NM_001330758.2:c.13C>T
NM_004168.4:c.13C>TMANE SELECT
NP_001281261.1:p.Arg5Trp
NP_001317687.1:p.Arg5Trp
NP_004159.2:p.Arg5Trp
LRG_315t1:c.13C>T
LRG_315:g.5128C>T
LRG_315p1:p.Arg5Trp
NC_000005.9:g.218483C>T
NM_004168.2:c.13C>T
NM_004168.3:c.13C>T

Protein change:

R5W

Links:

dbSNP: rs770866830

NCBI 1000 Genomes Browser:

rs770866830

Molecular consequence:

NM_001294332.2:c.13C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001330758.2:c.13C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_004168.4:c.13C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001171679	Ambry Genetics	criteria provided, single submitter (Ambry General Variant Classification Scheme_2022)	Uncertain significance (Feb 27, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001171679

Ambry Genetics

criteria provided, single submitter

(Ambry General Variant Classification Scheme_2022)

Uncertain significance
(Feb 27, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV001171679.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.R5W variant (also known as c.13C>T), located in coding exon 1 of the SDHA gene, results from a C to T substitution at nucleotide position 13. The arginine at codon 5 is replaced by tryptophan, an amino acid with dissimilar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Mar 5, 2024

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