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NM_001927.4(DES):c.1049G>A (p.Arg350Gln) AND Desmin-related myofibrillar myopathy

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 6, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001067513.7

Allele description [Variation Report for NM_001927.4(DES):c.1049G>A (p.Arg350Gln)]

NM_001927.4(DES):c.1049G>A (p.Arg350Gln)

Gene:
DES:desmin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q35
Genomic location:
Preferred name:
NM_001927.4(DES):c.1049G>A (p.Arg350Gln)
HGVS:
  • NC_000002.12:g.219421365G>A
  • NG_008043.1:g.7989G>A
  • NM_001927.4:c.1049G>AMANE SELECT
  • NP_001918.3:p.Arg350Gln
  • LRG_380t1:c.1049G>A
  • LRG_380:g.7989G>A
  • NC_000002.11:g.220286087G>A
  • NM_001927.3:c.1049G>A
Protein change:
R350Q
Links:
dbSNP: rs57965306
NCBI 1000 Genomes Browser:
rs57965306
Molecular consequence:
  • NM_001927.4:c.1049G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Desmin-related myofibrillar myopathy (MFM1)
Synonyms:
Desminopathy; Desmin related myopathy (former name); Desmin storage myopathy (former name); See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0011076; MedGen: C1832370; Orphanet: 363543; Orphanet: 98909; OMIM: 601419

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001232579Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Sep 6, 2023)
germlineclinical testing

PubMed (8)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Next-Generation Sequencing to Diagnose Muscular Dystrophy, Rhabdomyolysis, and HyperCKemia.

Wu L, Brady L, Shoffner J, Tarnopolsky MA.

Can J Neurol Sci. 2018 May;45(3):262-268. doi: 10.1017/cjn.2017.286. Epub 2018 Jan 31.

PubMed [citation]
PMID:
29382405

Importance of Variant Interpretation in Whole-Exome Molecular Autopsy: Population-Based Case Series.

Shanks GW, Tester DJ, Ackerman JP, Simpson MA, Behr ER, White SM, Ackerman MJ.

Circulation. 2018 Jun 19;137(25):2705-2715. doi: 10.1161/CIRCULATIONAHA.117.031053.

PubMed [citation]
PMID:
29915097
See all PubMed Citations (8)

Details of each submission

From Invitae, SCV001232579.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (8)

Description

This sequence change replaces arginine, which is basic and polar, with glutamine, which is neutral and polar, at codon 350 of the DES protein (p.Arg350Gln). This variant is present in population databases (rs57965306, gnomAD 0.005%). This missense change has been observed in individual(s) with centronuclear myopathy and/or suffered a sudden unexplained death (PMID: 29382405, 29915097). ClinVar contains an entry for this variant (Variation ID: 596421). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on DES protein function. This variant disrupts the p.Arg350 amino acid residue in DES. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 15800015, 17439987, 20448486, 25394388, 27393313). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024