NM_001045.6(SLC6A4):c.1368C>T (p.His456=) AND Behavior disorder

Germline classification:: Likely benign (1 submission)
Last evaluated:: Aug 8, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001127233.4

Allele description [Variation Report for NM_001045.6(SLC6A4):c.1368C>T (p.His456=)]

NM_001045.6(SLC6A4):c.1368C>T (p.His456=)

Gene:

SLC6A4:solute carrier family 6 member 4 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17q11.2

Genomic location:

Preferred name:

NM_001045.6(SLC6A4):c.1368C>T (p.His456=)

HGVS:

NC_000017.11:g.30210596G>A
NG_011747.2:g.30341C>T
NM_001045.6:c.1368C>TMANE SELECT
NP_001036.1:p.His456=
NC_000017.10:g.28537614G>A
NM_001045.5:c.1368C>T

Links:

dbSNP: rs201659393

NCBI 1000 Genomes Browser:

rs201659393

Molecular consequence:

NM_001045.6:c.1368C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Behavior disorder
Synonyms:: behavioral disorder
Identifiers:: MedGen: C0004930

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001286525	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification Criteria 13 December 2019)	Likely benign (Aug 8, 2017)	germline	clinical testing	PubMed (1) [See all records that cite this PMID] Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001286525

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)

Likely benign
(Aug 8, 2017)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A large-scale screen for coding variants in SERT/SLC6A4 in autism spectrum disorders.

Sakurai T, Reichert J, Hoffman EJ, Cai G, Jones HB, Faham M, Buxbaum JD.

Autism Res. 2008 Aug;1(4):251-7. doi: 10.1002/aur.30.

PubMed [citation]

PMID:: 19360675
PMCID:: PMC2678895

Details of each submission

From Illumina Laboratory Services, Illumina, SCV001286525.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). Publications were found based on this search. The evidence from the literature, in combination with allele frequency data from public databases where available, was sufficient to determine this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 9, 2023

ClinVar

Relating variation to medicine