NM_001379081.2(FREM1):c.2788A>G (p.Ile930Val) AND Oculotrichoanal syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jan 13, 2018
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001166135.4

Allele description [Variation Report for NM_001379081.2(FREM1):c.2788A>G (p.Ile930Val)]

NM_001379081.2(FREM1):c.2788A>G (p.Ile930Val)

Genes:

FREM1:FRAS1 related extracellular matrix 1 [Gene - OMIM - HGNC]
LOC126860582:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:14812530-14813729 [Gene]

Variant type:

single nucleotide variant

Cytogenetic location:

9p22.3

Genomic location:

Preferred name:

NM_001379081.2(FREM1):c.2788A>G (p.Ile930Val)

HGVS:

NC_000009.12:g.14812917T>C
NG_017005.2:g.102320A>G
NM_001379081.2:c.2788A>GMANE SELECT
NM_144966.7:c.2788A>G
NP_001366010.1:p.Ile930Val
NP_659403.4:p.Ile930Val
NP_659403.4:p.Ile930Val
NC_000009.11:g.14812915T>C
NM_144966.5:c.2788A>G
NR_163238.2:n.3604A>G
NR_163239.2:n.3543A>G

Protein change:

I930V

Links:

dbSNP: rs771396927

NCBI 1000 Genomes Browser:

rs771396927

Molecular consequence:

NM_001379081.2:c.2788A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_144966.7:c.2788A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_163238.2:n.3604A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_163239.2:n.3543A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Oculotrichoanal syndrome (MOTA)
Synonyms:: Marles Greenberg Persaud syndrome; Unilateral upper eyelid coloboma, aberrant anterior hairline pattern, and anal anomalies; Marles syndrome; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0009560; MedGen: C1855425; OMIM: 248450

Recent activity

Clear Turn Off Turn On

Mus musculus guanine nucleotide regulatory protein mRNA, complete cds
Mus musculus guanine nucleotide regulatory protein mRNA, complete cds
gi|1237255|gb|L34290.1|MUSGNRPA

Nucleotide
Homo sapiens Fc alpha receptor (FCAR), transcript variant 1, mRNA
Homo sapiens Fc alpha receptor (FCAR), transcript variant 1, mRNA
gi|1519242819|ref|NM_002000.4|

Nucleotide
RecName: Full=Cytochrome P450 1A1; Short=CYPIA1; AltName: Full=Cytochrome P450 f...
RecName: Full=Cytochrome P450 1A1; Short=CYPIA1; AltName: Full=Cytochrome P450 form 6; AltName: Full=Cytochrome P450-C; AltName: Full=Cytochrome P450-P1; AltName: Full=Hydroperoxy icosatetraenoate dehydratase
gi|117139|sp|P04798.1|CP1A1_HUMAN

Protein

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001328474	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification Criteria 13 December 2019)	Uncertain significance (Jan 13, 2018)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001328474

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)

Uncertain significance
(Jan 13, 2018)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV001328474.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 20, 2024

ClinVar

Relating variation to medicine