NM_000899.5(KITLG):c.255G>C (p.Leu85=) AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: Apr 19, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001195329.4

Allele description [Variation Report for NM_000899.5(KITLG):c.255G>C (p.Leu85=)]

NM_000899.5(KITLG):c.255G>C (p.Leu85=)

Gene:

KITLG:KIT ligand [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12q21.32

Genomic location:

Preferred name:

NM_000899.5(KITLG):c.255G>C (p.Leu85=)

HGVS:

NC_000012.12:g.88518805C>G
NG_012098.2:g.66657G>C
NM_000899.5:c.255G>CMANE SELECT
NM_003994.6:c.255G>C
NP_000890.1:p.Leu85=
NP_003985.2:p.Leu85=
LRG_1379t1:c.255G>C
LRG_1379:g.66657G>C
LRG_1379p1:p.Leu85=
NC_000012.11:g.88912582C>G

Links:

dbSNP: rs767292529

NCBI 1000 Genomes Browser:

rs767292529

Molecular consequence:

NM_000899.5:c.255G>C - synonymous variant - [Sequence Ontology: SO:0001819]
NM_003994.6:c.255G>C - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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uncharacterized protein [Arabidopsis thaliana]
uncharacterized protein [Arabidopsis thaliana]
Gene ID:833814

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Mitochondrial transcription termination factor family protein [Arabidopsis thal...
Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]
Gene ID:827709

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001365675	Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	criteria provided, single submitter (LMM Criteria)	Likely benign (Apr 19, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001365675

Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine

criteria provided, single submitter

(LMM Criteria)

Likely benign
(Apr 19, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	1	1	not provided	not provided	not provided	clinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]

PMID:: 24033266
PMCID:: PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV001365675.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

Description

The p.Leu85Leu variant in KITLG is classified as likely benign because it does not alter an amino acid residue, it is not located within the splice consensus sequence, and splice prediction algorithms do not predict a newly created splice site. ACMG/AMP Criteria applied: BP4, BP7.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		1	not provided	1	not provided

Last Updated: Dec 24, 2022

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