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NM_000371.4(TTR):c.155T>C (p.Val52Ala) AND Familial amyloid neuropathy

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Oct 8, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001215017.6

Allele description [Variation Report for NM_000371.4(TTR):c.155T>C (p.Val52Ala)]

NM_000371.4(TTR):c.155T>C (p.Val52Ala)

Gene:
TTR:transthyretin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
18q12.1
Genomic location:
Preferred name:
NM_000371.4(TTR):c.155T>C (p.Val52Ala)
HGVS:
  • NC_000018.10:g.31592981T>C
  • NG_009490.1:g.6215T>C
  • NM_000371.4:c.155T>CMANE SELECT
  • NP_000362.1:p.Val52Ala
  • LRG_416t1:c.155T>C
  • LRG_416:g.6215T>C
  • NC_000018.9:g.29172944T>C
  • NM_000371.3:c.155T>C
Protein change:
V52A
Links:
dbSNP: rs2073493951
NCBI 1000 Genomes Browser:
rs2073493951
Molecular consequence:
  • NM_000371.4:c.155T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Familial amyloid neuropathy
Synonyms:
Amyloidosis Transthyretin related; Amyloid polyneuropathy transthyretin related; Transthyretin amyloidosis; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007100; MedGen: C2751492; Orphanet: 85447; Orphanet: 85451; OMIM: 105210

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001386736Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Oct 8, 2020)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Genetic study of transthyretin amyloid neuropathies: carrier risks among French and Portuguese families.

Planté-Bordeneuve V, Carayol J, Ferreira A, Adams D, Clerget-Darpoux F, Misrahi M, Said G, Bonaïti-Pellié C.

J Med Genet. 2003 Nov;40(11):e120. No abstract available.

PubMed [citation]
PMID:
14627687
PMCID:
PMC1735318

A novel transthyretin mutation V32A in a Chinese man with late-onset amyloid polyneuropathy.

Pica EC, Pramono ZA, Verma KK, San LP, Chee YW.

Muscle Nerve. 2005 Aug;32(2):223-5.

PubMed [citation]
PMID:
15793844
See all PubMed Citations (7)

Details of each submission

From Invitae, SCV001386736.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Val52 amino acid residue in TTR. Other variant(s) that disrupt this residue have been observed in individuals with TTR-related conditions (PMID: 14627687), which suggests that this may be a clinically significant amino acid residue. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Not Available"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Not Available"). This variant has been observed in individual(s) with hereditary transthyretin-mediated amyloidosis (hATTR amyloidosis) (PMID: 15793844, 17484624, 30685801, 29524093, 24101130). This variant is also known as p.Val32Ala. ClinVar contains an entry for this variant (Variation ID: 944589). This variant is not present in population databases (ExAC no frequency). This sequence change replaces valine with alanine at codon 52 of the TTR protein (p.Val52Ala). The valine residue is moderately conserved and there is a small physicochemical difference between valine and alanine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 19, 2024