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NM_000128.4(F11):c.1556G>A (p.Trp519Ter) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 19, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001247722.5

Allele description

NM_000128.4(F11):c.1556G>A (p.Trp519Ter)

Genes:
F11-AS1:F11 antisense RNA 1 [Gene - HGNC]
F11:coagulation factor XI [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q35.2
Genomic location:
Preferred name:
NM_000128.4(F11):c.1556G>A (p.Trp519Ter)
HGVS:
  • NC_000004.12:g.186286490G>A
  • NG_008051.1:g.25527G>A
  • NM_000128.4:c.1556G>AMANE SELECT
  • NP_000119.1:p.Trp519Ter
  • NP_000119.1:p.Trp519Ter
  • LRG_583t1:c.1556G>A
  • LRG_583:g.25527G>A
  • LRG_583p1:p.Trp519Ter
  • NC_000004.11:g.187207644G>A
  • NM_000128.3:c.1556G>A
Protein change:
W519*
Links:
dbSNP: rs201007090
NCBI 1000 Genomes Browser:
rs201007090
Molecular consequence:
  • NM_000128.4:c.1556G>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001421162Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Pathogenic
(Dec 19, 2023) 		germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Congenital factor XI deficiency: an update.

Duga S, Salomon O.

Semin Thromb Hemost. 2013 Sep;39(6):621-31. doi: 10.1055/s-0033-1353420. Epub 2013 Aug 8. Review.

PubMed [citation]
PMID:
23929304

A factor XI deficiency associated with a nonsense mutation (Trp501stop) in the catalytic domain.

Iijima K, Udagawa A, Kawasaki H, Murakami F, Shimomura T, Ikawa S.

Br J Haematol. 2000 Nov;111(2):556-8.

PubMed [citation]
PMID:
11122101
See all PubMed Citations (4)

Details of each submission

From Invitae, SCV001421162.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

This sequence change creates a premature translational stop signal (p.Trp519*) in the F11 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in F11 are known to be pathogenic (PMID: 23929304). This variant is present in population databases (rs201007090, gnomAD 0.03%). This premature translational stop signal has been observed in individual(s) with factor XI deficiency (PMID: 11122101, 20015217). This variant is also known as p.501*. ClinVar contains an entry for this variant (Variation ID: 188887). For these reasons, this variant has been classified as Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024