NM_020982.4(CLDN9):c.370_372dup (p.Ile124dup) AND Hearing loss

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Oct 19, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001255162.1

Allele description [Variation Report for NM_020982.4(CLDN9):c.370_372dup (p.Ile124dup)]

NM_020982.4(CLDN9):c.370_372dup (p.Ile124dup)

Gene:

CLDN9:claudin 9 [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

16p13.3

Genomic location:

Preferred name:

NM_020982.4(CLDN9):c.370_372dup (p.Ile124dup)

HGVS:

NC_000016.10:g.3013732_3013734dup
NM_020982.4:c.370_372dupMANE SELECT
NP_066192.1:p.Ile124dup
NC_000016.9:g.3063733_3063735dup
NM_020982.2:c.370_372dup

Links:

dbSNP: rs773682747

NCBI 1000 Genomes Browser:

rs773682747

Molecular consequence:

NM_020982.4:c.370_372dup - inframe_insertion - [Sequence Ontology: SO:0001821]

Condition(s)

Name:: Hearing loss
Identifiers:: MedGen: C3887873

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001431265	Equipe Genetique des Anomalies du Developpement, Université de Bourgogne	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Oct 19, 2019)	unknown	clinical testing	PubMed (2) [See all records that cite these PMIDs] 31175426, 25741868

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001431265

Equipe Genetique des Anomalies du Developpement, Université de Bourgogne

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Oct 19, 2019)

unknown

clinical testing

PubMed (2)
[See all records that cite these PMIDs]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	yes	1	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A truncating CLDN9 variant is associated with autosomal recessive nonsyndromic hearing loss.

Sineni CJ, Yildirim-Baylan M, Guo S, Camarena V, Wang G, Tokgoz-Yilmaz S, Duman D, Bademci G, Tekin M.

Hum Genet. 2019 Oct;138(10):1071-1075. doi: 10.1007/s00439-019-02037-1. Epub 2019 Jun 7.

PubMed [citation]

PMID:: 31175426
PMCID:: PMC6745279

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Equipe Genetique des Anomalies du Developpement, Université de Bourgogne, SCV001431265.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (2)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	not provided		1	not provided	not provided	not provided

Last Updated: Apr 23, 2022

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