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NM_198334.3(GANAB):c.1433G>A (p.Arg478Gln) AND Polycystic kidney disease 3 with or without polycystic liver disease

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 23, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001255205.1

Allele description

NM_198334.3(GANAB):c.1433G>A (p.Arg478Gln)

Gene:
GANAB:glucosidase II alpha subunit [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q12.3
Genomic location:
Preferred name:
NM_198334.3(GANAB):c.1433G>A (p.Arg478Gln)
HGVS:
  • NC_000011.10:g.62630459C>T
  • NG_053018.1:g.21268G>A
  • NM_001278192.2:c.1157G>A
  • NM_001278193.2:c.1091G>A
  • NM_001278194.2:c.1142G>A
  • NM_001329222.2:c.1142G>A
  • NM_001329223.2:c.1142G>A
  • NM_001329224.2:c.710G>A
  • NM_001329225.2:c.710G>A
  • NM_198334.3:c.1433G>AMANE SELECT
  • NM_198335.4:c.1499G>A
  • NP_001265121.1:p.Arg386Gln
  • NP_001265122.1:p.Arg364Gln
  • NP_001265123.1:p.Arg381Gln
  • NP_001316151.1:p.Arg381Gln
  • NP_001316152.1:p.Arg381Gln
  • NP_001316153.1:p.Arg237Gln
  • NP_001316154.1:p.Arg237Gln
  • NP_938148.1:p.Arg478Gln
  • NP_938149.2:p.Arg500Gln
  • NC_000011.9:g.62397931C>T
Protein change:
R237Q
Links:
dbSNP: rs1355968760
NCBI 1000 Genomes Browser:
rs1355968760
Molecular consequence:
  • NM_001278192.2:c.1157G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001278193.2:c.1091G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001278194.2:c.1142G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001329222.2:c.1142G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001329223.2:c.1142G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001329224.2:c.710G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001329225.2:c.710G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198334.3:c.1433G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198335.4:c.1499G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Polycystic kidney disease 3 with or without polycystic liver disease
Synonyms:
POLYCYSTIC KIDNEY DISEASE, ADULT, TYPE III; Polycystic kidney disease 3
Identifiers:
MONDO: MONDO:0010916; MedGen: C3887964; OMIM: 600666

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001431565Arkana Molecular Diagnostic Laboratory, Arkana Laboratories
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Mar 23, 2020)
inheritedclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedinheritedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Arkana Molecular Diagnostic Laboratory, Arkana Laboratories, SCV001431565.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Aug 5, 2023