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NM_173630.4(RTTN):c.2953A>G (p.Arg985Gly) AND Microcephalic primordial dwarfism due to RTTN deficiency

Germline classification:
Pathogenic (3 submissions)
Last evaluated:
Jan 1, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001255727.5

Allele description [Variation Report for NM_173630.4(RTTN):c.2953A>G (p.Arg985Gly)]

NM_173630.4(RTTN):c.2953A>G (p.Arg985Gly)

Gene:
RTTN:rotatin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
18q22.2
Genomic location:
Preferred name:
NM_173630.4(RTTN):c.2953A>G (p.Arg985Gly)
HGVS:
  • NC_000018.10:g.70134474T>C
  • NG_033104.1:g.76253A>G
  • NM_001318520.2:c.217A>G
  • NM_173630.4:c.2953A>GMANE SELECT
  • NP_001305449.1:p.Arg73Gly
  • NP_775901.3:p.Arg985Gly
  • NC_000018.9:g.67801710T>C
  • NM_173630.3:c.2953A>G
Protein change:
R73G; ARG985GLY
Links:
OMIM: 610436.0007
Molecular consequence:
  • NM_001318520.2:c.217A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_173630.4:c.2953A>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
3

Condition(s)

Name:
Microcephalic primordial dwarfism due to RTTN deficiency (MSSP)
Synonyms:
Microcephaly, short stature, and polymicrogyria with or without seizures; MICROCEPHALY, SHORT STATURE, AND POLYMICROGYRIA
Identifiers:
MONDO: MONDO:0018764; MedGen: C3553831; OMIM: 614833

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000897634OMIM
no assertion criteria provided
Pathogenic
(Apr 3, 2019)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

SCV001432298Service de Génétique Moléculaire, Hôpital Robert Debré
no assertion criteria provided
Pathogenicunknownclinical testing

SCV001481952Institut de Recherche Interdisciplinaire en Biologie Humaine et Moleculaire, Universite Libre de Bruxelles
no assertion criteria provided

(ACMG Guidelines, 2015)
Pathogenic
(Jan 1, 2020)
inheritedclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedinheritedyesnot providednot providednot providednot providednot providedclinical testing
not providedunknownyesnot provided3not providednot providednot providedclinical testing

Citations

PubMed

Expanding the phenotype of RTTN variations: a new family with primary microcephaly, severe growth failure, brain malformations and dermatitis.

Grandone A, Torella A, Santoro C, Giugliano T, Del Vecchio Blanco F, Mutarelli M, Cirillo M, Cirillo G, Piluso G, Capristo C, Festa A, Marzuillo P, Miraglia Del Giudice E, Perrone L, Nigro V.

Clin Genet. 2016 Nov;90(5):445-450. doi: 10.1111/cge.12771. Epub 2016 Apr 29.

PubMed [citation]
PMID:
26940245

Recurrent RTTN mutation leading to severe microcephaly, polymicrogyria and growth restriction.

Cavallin M, Bery A, Maillard C, Salomon LJ, Bole C, Reilly ML, Nitschké P, Boddaert N, Bahi-Buisson N.

Eur J Med Genet. 2018 Dec;61(12):755-758. doi: 10.1016/j.ejmg.2018.08.001. Epub 2018 Aug 16.

PubMed [citation]
PMID:
30121372
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000897634.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a brother and sister, born of first-cousin Moroccan parents, with microcephaly, short stature, and polymicrogyria (MSSP; 614833), Grandone et al. (2016) identified a homozygous T-to-C transition (chr18.6,780,1710T-C, GRCh37) at the penultimate base of exon 23 of the RTTN gene, resulting in an arg985-to-gly (R985G) substitution. The mutation, which was found by whole-exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family and was not found in the gnomAD database. Grandone et al. (2016) showed that the mutation also led to a splicing abnormality, resulting in 2 different mRNAs, one that skipped exon 23, and the other that skipped exons 23 and 24, producing an out-of-frame messenger.

In a boy, born of consanguineous Moroccan parents, with MSSP, Cavallin et al. (2018) identified homozygosity for the R985G mutation in the RTTN gene. The mutation, which was found by trio-based whole-exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Service de Génétique Moléculaire, Hôpital Robert Debré, SCV001432298.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot provided3not provided

From Institut de Recherche Interdisciplinaire en Biologie Humaine et Moleculaire, Universite Libre de Bruxelles, SCV001481952.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024