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NM_000135.4(FANCA):c.4167+46C>T AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 28, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001256417.1

Allele description [Variation Report for NM_000135.4(FANCA):c.4167+46C>T]

NM_000135.4(FANCA):c.4167+46C>T

Genes:
FANCA:FA complementation group A [Gene - OMIM - HGNC]
ZNF276:zinc finger protein 276 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q24.3
Genomic location:
Preferred name:
NM_000135.4(FANCA):c.4167+46C>T
HGVS:
  • NC_000016.10:g.89739087G>A
  • NG_011706.1:g.82571C>T
  • NM_000135.4:c.4167+46C>TMANE SELECT
  • NM_001113525.2:c.*841G>AMANE SELECT
  • NM_001286167.3:c.4171+42C>T
  • NM_152287.4:c.*841G>A
  • LRG_495t1:c.4167+46C>T
  • LRG_495:g.82571C>T
  • NC_000016.9:g.89805495G>A
  • NM_000135.2:c.4167+46C>T
  • NR_110122.2:n.2841G>A
  • NR_110126.2:n.2724G>A
  • NR_110128.2:n.2664G>A
  • NR_110129.2:n.2758G>A
Links:
dbSNP: rs191404781
NCBI 1000 Genomes Browser:
rs191404781
Molecular consequence:
  • NM_001113525.2:c.*841G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_152287.4:c.*841G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_000135.4:c.4167+46C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001286167.3:c.4171+42C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NR_110122.2:n.2841G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_110126.2:n.2724G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_110128.2:n.2664G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_110129.2:n.2758G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001425866Leiden Open Variation Database
no assertion criteria provided
Pathogenic
(Feb 28, 2020)
germlinecuration

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedcuration

Citations

PubMed

Large-scale discovery of novel genetic causes of developmental disorders.

Deciphering Developmental Disorders Study..

Nature. 2015 Mar 12;519(7542):223-8. doi: 10.1038/nature14135. Epub 2014 Dec 24.

PubMed [citation]
PMID:
25533962
PMCID:
PMC5955210

Details of each submission

From Leiden Open Variation Database, SCV001425866.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcuration PubMed (1)

Description

Curator: Arleen D. Auerbach. Submitter to LOVD: Johan den Dunnen.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024