NM_015021.3(ZNF292):c.6160_6161del (p.Glu2054fs) AND Intellectual disability

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Sep 10, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001260794.4

Allele description [Variation Report for NM_015021.3(ZNF292):c.6160_6161del (p.Glu2054fs)]

NM_015021.3(ZNF292):c.6160_6161del (p.Glu2054fs)

Gene:

ZNF292:zinc finger protein 292 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

6q14.3

Genomic location:

Preferred name:

NM_015021.3(ZNF292):c.6160_6161del (p.Glu2054fs)

HGVS:

NC_000006.12:g.87259789_87259790del
NG_054887.1:g.109239_109240del
NM_001351444.2:c.5740_5741del
NM_015021.3:c.6160_6161delMANE SELECT
NP_001338373.1:p.Glu1914fs
NP_055836.1:p.Glu2054fs
NC_000006.11:g.87969506_87969507del
NC_000006.11:g.87969507_87969508del
NM_015021.1:c.6160_6161del
NM_015021.1:c.6160_6161delGA
NM_015021.2:c.6160_6161del

Protein change:

E1914fs

Links:

OMIM: 616213.0005; dbSNP: rs1301328139

NCBI 1000 Genomes Browser:

rs1301328139

Molecular consequence:

NM_001351444.2:c.5740_5741del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_015021.3:c.6160_6161del - frameshift variant - [Sequence Ontology: SO:0001589]

Observations:

Condition(s)

Name:: Intellectual disability
Synonyms:: Intellectual functioning disability; intellectual disabilities; Intellectual developmental disorder
Identifiers:: MONDO: MONDO:0001071; MeSH: D008607; MedGen: C3714756; Human Phenotype Ontology: HP:0001249

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001437887	Diagnostic Laboratory, Strasbourg University Hospital	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Sep 10, 2020)	de novo	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001437887

Diagnostic Laboratory, Strasbourg University Hospital

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Sep 10, 2020)

de novo

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	de novo	yes	1	not provided	not provided	1	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Diagnostic Laboratory, Strasbourg University Hospital, SCV001437887.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	de novo	yes	1	not provided	not provided		1	not provided	not provided	not provided

Last Updated: May 1, 2024

ClinVar

Relating variation to medicine