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NM_001128126.3(AP4S1):c.289C>T (p.Arg97Ter) AND Intellectual disability

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 10, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001260893.9

Allele description [Variation Report for NM_001128126.3(AP4S1):c.289C>T (p.Arg97Ter)]

NM_001128126.3(AP4S1):c.289C>T (p.Arg97Ter)

Gene:
AP4S1:adaptor related protein complex 4 subunit sigma 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q12
Genomic location:
Preferred name:
NM_001128126.3(AP4S1):c.289C>T (p.Arg97Ter)
HGVS:
  • NC_000014.9:g.31072968C>T
  • NG_031913.1:g.52863C>T
  • NM_001128126.3:c.289C>TMANE SELECT
  • NM_001254726.2:c.289C>T
  • NM_001254727.2:c.289C>T
  • NM_001254728.2:c.289C>T
  • NM_001254729.2:c.289C>T
  • NM_007077.5:c.289C>T
  • NP_001121598.1:p.Arg97Ter
  • NP_001241655.1:p.Arg97Ter
  • NP_001241656.1:p.Arg97Ter
  • NP_001241656.1:p.Arg97Ter
  • NP_001241657.1:p.Arg97Ter
  • NP_001241658.1:p.Arg97Ter
  • NP_009008.2:p.Arg97Ter
  • NP_009008.2:p.Arg97Ter
  • NC_000014.8:g.31542174C>T
  • NM_001254727.1:c.289C>T
  • NM_007077.3:c.289C>T
  • NM_007077.4:c.289C>T
Protein change:
R97*; ARG97TER
Links:
OMIM: 607243.0003; dbSNP: rs200440467
NCBI 1000 Genomes Browser:
rs200440467
Molecular consequence:
  • NM_001128126.3:c.289C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001254726.2:c.289C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001254727.2:c.289C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001254728.2:c.289C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001254729.2:c.289C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_007077.5:c.289C>T - nonsense - [Sequence Ontology: SO:0001587]
Observations:
1

Condition(s)

Name:
Intellectual disability
Synonyms:
Intellectual functioning disability; intellectual disabilities; Intellectual developmental disorder
Identifiers:
MONDO: MONDO:0001071; MeSH: D008607; MedGen: C3714756; Human Phenotype Ontology: HP:0001249

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001437993Diagnostic Laboratory, Strasbourg University Hospital
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Sep 10, 2020) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyes1not providednot provided1not providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Diagnostic Laboratory, Strasbourg University Hospital, SCV001437993.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyes1not providednot provided1not providednot providednot provided

Last Updated: Nov 10, 2024