NM_005431.2(XRCC2):c.643C>T (p.Arg215Ter) AND Short stature, microcephaly, and endocrine dysfunction

Germline classification:: Likely pathogenic (1 submission)
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001261591.1

Allele description [Variation Report for NM_005431.2(XRCC2):c.643C>T (p.Arg215Ter)]

NM_005431.2(XRCC2):c.643C>T (p.Arg215Ter)

Gene:

XRCC2:X-ray repair cross complementing 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q36.1

Genomic location:

Preferred name:

NM_005431.2(XRCC2):c.643C>T (p.Arg215Ter)

HGVS:

NC_000007.14:g.152648842G>A
NG_027988.2:g.32324C>T
NM_005431.2:c.643C>TMANE SELECT
NP_005422.1:p.Arg215Ter
LRG_323t1:c.643C>T
LRG_323:g.32324C>T
LRG_323p1:p.Arg215Ter
NC_000007.13:g.152345927G>A
NG_027988.1:g.32324C>T
NM_005431.1:c.643C>T

Protein change:

R215*; ARG215TER

Links:

OMIM: 600375.0001; dbSNP: rs143153871

NCBI 1000 Genomes Browser:

rs143153871

Molecular consequence:

NM_005431.2:c.643C>T - nonsense - [Sequence Ontology: SO:0001587]

Observations:

Condition(s)

Name:: Short stature, microcephaly, and endocrine dysfunction (SSMED)
Identifiers:: MONDO: MONDO:0014686; MedGen: C4225288; Orphanet: 436182; OMIM: 616541

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001438863	Pathology and Clinical Laboratory Medicine, King Fahad Medical City	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001438863

Pathology and Clinical Laboratory Medicine, King Fahad Medical City

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
Arab	germline	yes	2	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Pathology and Clinical Laboratory Medicine, King Fahad Medical City, SCV001438863.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	Arab	2	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		2	not provided	not provided	not provided

Last Updated: May 1, 2024

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