NM_022786.3(ARV1):c.309_310del (p.Cys104fs) AND not provided

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Feb 1, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001291569.2

Allele description [Variation Report for NM_022786.3(ARV1):c.309_310del (p.Cys104fs)]

NM_022786.3(ARV1):c.309_310del (p.Cys104fs)

Gene:

ARV1:ARV1 homolog, fatty acid homeostasis modulator [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

1q42.2

Genomic location:

Preferred name:

NM_022786.3(ARV1):c.309_310del (p.Cys104fs)

HGVS:

NC_000001.11:g.230990122CT[1]
NG_052022.1:g.16074CT[1]
NM_001346992.2:c.309_310del
NM_022786.3:c.309_310delMANE SELECT
NP_001333921.1:p.Cys104fs
NP_073623.1:p.Cys104fs
NC_000001.10:g.231125868CT[1]
NR_144538.2:n.319CT[1]

Protein change:

C104fs

Links:

dbSNP: rs1679188636

NCBI 1000 Genomes Browser:

rs1679188636

Molecular consequence:

NM_001346992.2:c.309_310del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_022786.3:c.309_310del - frameshift variant - [Sequence Ontology: SO:0001589]
NR_144538.2:n.319CT[1] - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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MULTISPECIES: OsmC family protein [Ralstonia]
MULTISPECIES: OsmC family protein [Ralstonia]
gi|499309564|ref|WP_011000339.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001480101	Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Feb 1, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001480101

Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Feb 1, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	1	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen, SCV001480101.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	1	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jun 23, 2024

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