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NM_133379.5(TTN):c.15056A>C (p.His5019Pro) AND not provided

Germline classification:
Uncertain significance (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001356916.1

Allele description [Variation Report for NM_133379.5(TTN):c.15056A>C (p.His5019Pro)]

NM_133379.5(TTN):c.15056A>C (p.His5019Pro)

Genes:
LOC126806432:CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:179611985-179613184 [Gene]
TTN:titin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q31.2
Genomic location:
Preferred name:
NM_133379.5(TTN):c.15056A>C (p.His5019Pro)
HGVS:
  • NC_000002.12:g.178747344T>G
  • NG_011618.3:g.88459A>C
  • NM_001256850.1:c.10361-5423A>C
  • NM_001267550.2:c.11312-5423A>CMANE SELECT
  • NM_003319.4:c.10223-5423A>C
  • NM_133378.4:c.10360+5780A>C
  • NM_133379.5:c.15056A>C
  • NM_133432.3:c.10598-5423A>C
  • NM_133437.4:c.10799-5423A>C
  • NP_596870.2:p.His5019Pro
  • LRG_391:g.88459A>C
  • NC_000002.11:g.179612071T>G
Protein change:
H5019P
Links:
dbSNP: rs754315701
NCBI 1000 Genomes Browser:
rs754315701
Molecular consequence:
  • NM_001256850.1:c.10361-5423A>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001267550.2:c.11312-5423A>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_003319.4:c.10223-5423A>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_133378.4:c.10360+5780A>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_133432.3:c.10598-5423A>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_133437.4:c.10799-5423A>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_133379.5:c.15056A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001552206Department of Pathology and Laboratory Medicine, Sinai Health System - The Canadian Open Genetics Repository (COGR)

See additional submitters

no assertion criteria provided
Uncertain significanceunknownclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Department of Pathology and Laboratory Medicine, Sinai Health System - The Canadian Open Genetics Repository (COGR), SCV001552206.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The TTN p.His5019Pro variant was not identified in the literature nor was it identified in dbSNP, ClinVar or in the following control databases: the 1000 Genomes Project, the NHLBI GO Exome Sequencing Project, the Exome Aggregation Consortium (August 8th 2016), or the Genome Aggregation Database (March 6, 2019, v2.1.1). The p.His5019 residue has limited species conservation information and computational analyses (PolyPhen-2, BLOSUM, MutationTaster) provide inconsistent predictions regarding the impact to the protein. The variant occurs outside of the splicing consensus sequence and two of four in silico or computational prediction software programs (SpliceSiteFinder, MaxEntScan, NNSPLICE, GeneSplicer) predict a greater than 10% difference in splicing; this is not very predictive of pathogenicity. In summary, based on the above information the clinical significance of this variant cannot be determined with certainty at this time. This variant is classified as a variant of uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023