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NM_000504.4(F10):c.1247A>T (p.Gln416Leu) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Aug 20, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001508719.5

Allele description [Variation Report for NM_000504.4(F10):c.1247A>T (p.Gln416Leu)]

NM_000504.4(F10):c.1247A>T (p.Gln416Leu)

Gene:
F10:coagulation factor X [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q34
Genomic location:
Preferred name:
NM_000504.4(F10):c.1247A>T (p.Gln416Leu)
HGVS:
  • NC_000013.11:g.113149297A>T
  • NG_009258.1:g.31499A>T
  • NM_000504.4:c.1247A>TMANE SELECT
  • NM_001312674.2:c.1115A>T
  • NM_001312675.2:c.*238A>T
  • NP_000495.1:p.Gln416Leu
  • NP_001299603.1:p.Gln372Leu
  • LRG_548t1:c.1247A>T
  • LRG_548:g.31499A>T
  • NC_000013.10:g.113803611A>T
  • NM_000504.3:c.1247A>T
  • p.Gln416Leu
Protein change:
Q372L
Links:
dbSNP: rs759544193
NCBI 1000 Genomes Browser:
rs759544193
Molecular consequence:
  • NM_001312675.2:c.*238A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_000504.4:c.1247A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001312674.2:c.1115A>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001715058Mayo Clinic Laboratories, Mayo Clinic
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Aug 20, 2020)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Citations

PubMed

Genotype analysis and identification of novel mutations in a multicentre cohort of patients with hereditary factor X deficiency.

Mitchell M, Gattens M, Kavakli K, Liesner R, Payne J, Norton M, Austin S.

Blood Coagul Fibrinolysis. 2019 Jan;30(1):34-41. doi: 10.1097/MBC.0000000000000787.

PubMed [citation]
PMID:
30507709

Genome editing of factor X in zebrafish reveals unexpected tolerance of severe defects in the common pathway.

Hu Z, Liu Y, Huarng MC, Menegatti M, Reyon D, Rost MS, Norris ZG, Richter CE, Stapleton AN, Chi NC, Peyvandi F, Joung JK, Shavit JA.

Blood. 2017 Aug 3;130(5):666-676. doi: 10.1182/blood-2017-02-765206. Epub 2017 Jun 2.

PubMed [citation]
PMID:
28576875
PMCID:
PMC5542852
See all PubMed Citations (3)

Details of each submission

From Mayo Clinic Laboratories, Mayo Clinic, SCV001715058.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (3)

Description

PS4_moderate, PM1, PM2, PP3

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

Last Updated: Dec 24, 2023