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NM_000350.3(ABCA4):c.5882G>A (p.Gly1961Glu) AND Retinitis pigmentosa 19

Germline classification:
Pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001542557.10

Allele description [Variation Report for NM_000350.3(ABCA4):c.5882G>A (p.Gly1961Glu)]

NM_000350.3(ABCA4):c.5882G>A (p.Gly1961Glu)

Gene:
ABCA4:ATP binding cassette subfamily A member 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p22.1
Genomic location:
Preferred name:
NM_000350.3(ABCA4):c.5882G>A (p.Gly1961Glu)
HGVS:
  • NC_000001.11:g.94008251C>T
  • NG_009073.1:g.117899G>A
  • NG_009073.2:g.117897G>A
  • NM_000350.3:c.5882G>AMANE SELECT
  • NM_001425324.1:c.5660G>A
  • NP_000341.2:p.Gly1961Glu
  • NP_000341.2:p.Gly1961Glu
  • NP_001412253.1:p.Gly1887Glu
  • NC_000001.10:g.94473807C>T
  • NM_000350.2:c.5882G>A
  • P78363:p.Gly1961Glu
Protein change:
G1887E; GLY1961GLU
Links:
UniProtKB: P78363#VAR_008475; OMIM: 601691.0007; dbSNP: rs1800553
NCBI 1000 Genomes Browser:
rs1800553
Molecular consequence:
  • NM_000350.3:c.5882G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425324.1:c.5660G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Retinitis pigmentosa 19 (RP19)
Synonyms:
ABCA4-Related Retinitis Pigmentosa
Identifiers:
MONDO: MONDO:0011137; MedGen: C1866422; Orphanet: 791; OMIM: 601718

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001760046Genomics England Pilot Project, Genomics England
criteria provided, single submitter

(ACGS Guidelines, 2016)
Pathogenicgermlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Genomics England Pilot Project, Genomics England, SCV001760046.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 9, 2024