NM_001099922.3(ALG13):c.2915G>T (p.Gly972Val) AND Congenital disorder of glycosylation

Germline classification:
Likely pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001543372.1

Allele description [Variation Report for NM_001099922.3(ALG13):c.2915G>T (p.Gly972Val)]

NM_001099922.3(ALG13):c.2915G>T (p.Gly972Val)

Gene:
ALG13:ALG13 UDP-N-acetylglucosaminyltransferase subunit [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq23
Genomic location:
Preferred name:
NM_001099922.3(ALG13):c.2915G>T (p.Gly972Val)
HGVS:
  • NC_000023.11:g.111744887G>T
  • NG_016238.1:g.68770G>T
  • NM_001099922.3:c.2915G>TMANE SELECT
  • NM_001257230.2:c.2384-7903G>T
  • NM_001257231.2:c.2681G>T
  • NM_001257234.2:c.2384-7903G>T
  • NM_001257237.2:c.2384-7903G>T
  • NM_001324292.2:c.2696-7903G>T
  • NM_001324293.1:c.2210-7903G>T
  • NP_001093392.1:p.Gly972Val
  • NP_001244160.1:p.Gly894Val
  • NC_000023.10:g.110988115G>T
  • NM_001099922.2:c.2915G>T
Protein change:
G894V
Links:
dbSNP: rs2148407095
NCBI 1000 Genomes Browser:
rs2148407095
Molecular consequence:
  • NM_001257230.2:c.2384-7903G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001257234.2:c.2384-7903G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001257237.2:c.2384-7903G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001324292.2:c.2696-7903G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001324293.1:c.2210-7903G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001099922.3:c.2915G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001257231.2:c.2681G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Congenital disorder of glycosylation (CDG)
Synonyms:
Carbohydrate-deficient glycoprotein syndrome; Congenital disorders of glycosylation
Identifiers:
MONDO: MONDO:0015286; MedGen: C0282577; Orphanet: 137

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001761930University of Washington Center for Mendelian Genomics, University of Washington
no assertion criteria provided
Likely pathogenicde novoresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyesnot providednot providednot providednot providednot providedresearch

Citations

PubMed

Predominant and novel de novo variants in 29 individuals with ALG13 deficiency: Clinical description, biomarker status, biochemical analysis, and treatment suggestions.

Ng BG, Eklund EA, Shiryaev SA, Dong YY, Abbott MA, Asteggiano C, Bamshad MJ, Barr E, Bernstein JA, Chelakkadan S, Christodoulou J, Chung WK, Ciliberto MA, Cousin J, Gardiner F, Ghosh S, Graf WD, Grunewald S, Hammond K, Hauser NS, Hoganson GE, Houck KM, et al.

J Inherit Metab Dis. 2020 Nov;43(6):1333-1348. doi: 10.1002/jimd.12290. Epub 2020 Aug 5.

PubMed [citation]
PMID:
32681751
PMCID:
PMC7722193

Details of each submission

From University of Washington Center for Mendelian Genomics, University of Washington, SCV001761930.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023