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NM_001292063.2(OTOG):c.1A>G (p.Met1Val) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Mar 15, 2019
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001561873.3

Allele description [Variation Report for NM_001292063.2(OTOG):c.1A>G (p.Met1Val)]

NM_001292063.2(OTOG):c.1A>G (p.Met1Val)

Gene:
OTOG:otogelin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.1
Genomic location:
Preferred name:
NM_001292063.2(OTOG):c.1A>G (p.Met1Val)
HGVS:
  • NC_000011.10:g.17547373A>G
  • NG_011883.2:g.2044T>C
  • NG_033191.2:g.5001A>G
  • NM_001277269.2:c.1A>G
  • NM_001292063.2:c.1A>GMANE SELECT
  • NP_001264198.1:p.Met1Val
  • NP_001278992.1:p.Met1Val
  • NC_000011.9:g.17568920A>G
  • NM_001277269.1:c.1A>G
Protein change:
M1V
Links:
dbSNP: rs953945741
NCBI 1000 Genomes Browser:
rs953945741
Molecular consequence:
  • NM_001277269.2:c.1A>G - initiator_codon_variant - [Sequence Ontology: SO:0001582]
  • NM_001292063.2:c.1A>G - initiator_codon_variant - [Sequence Ontology: SO:0001582]
  • NM_001277269.2:c.1A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001292063.2:c.1A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001784552GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Mar 15, 2019)
germlineclinical testing

Citation Link,

SCV005191195Breakthrough Genomics, Breakthrough Genomics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significancegermlinenot provided

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing, not provided

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From GeneDx, SCV001784552.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Initiation codon variant in a gene for which loss-of-function is a known mechanism of disease; Has not been previously published as pathogenic or benign to our knowledge

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005191195.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 25, 2024