NC_000006.12:g.43516856G>A AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jul 14, 2018
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001566214.3

Allele description [Variation Report for NC_000006.12:g.43516856G>A]

NC_000006.12:g.43516856G>A

Genes:

POLR1C:RNA polymerase I and III subunit C [Gene - OMIM - HGNC]
LOC129996517:ATAC-STARR-seq lymphoblastoid active region 24602 [Gene]
YIPF3:Yip1 domain family member 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

6p21.1

Genomic location:

Preferred name:

NC_000006.12:g.43516856G>A

HGVS:

NC_000006.12:g.43516856G>A
NG_028283.3:g.12155G>A
NM_015388.4:c.-49C>TMANE SELECT
NC_000006.11:g.43484594G>A

Links:

dbSNP: rs2231762

NCBI 1000 Genomes Browser:

rs2231762

Molecular consequence:

NM_015388.4:c.-49C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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Pleurotus sp. S2007 18S ribosomal RNA gene, partial sequence; internal transcrib...
Pleurotus sp. S2007 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
gi|393000302|gb|JQ868743.1|

Nucleotide
translation elongation factor 1-alpha, partial [Pleurotus sp. 58 QL-2015]
translation elongation factor 1-alpha, partial [Pleurotus sp. 58 QL-2015]
gi|908374731|gb|AKT44649.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001789699	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Jul 14, 2018)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001789699

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Jul 14, 2018)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001789699.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 8, 2024

ClinVar

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