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NM_001318852.2(MAPK8IP3):c.1735C>T (p.Arg579Cys) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 17, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001568532.3

Allele description [Variation Report for NM_001318852.2(MAPK8IP3):c.1735C>T (p.Arg579Cys)]

NM_001318852.2(MAPK8IP3):c.1735C>T (p.Arg579Cys)

Gene:
MAPK8IP3:mitogen-activated protein kinase 8 interacting protein 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.3
Genomic location:
Preferred name:
NM_001318852.2(MAPK8IP3):c.1735C>T (p.Arg579Cys)
HGVS:
  • NC_000016.10:g.1762843C>T
  • NM_001040439.2:c.1714C>T
  • NM_001318852.2:c.1735C>TMANE SELECT
  • NM_015133.3:c.1732C>T
  • NM_015133.5:c.1732C>T
  • NM_015133.5:c.1732C>T
  • NP_001035529.1:p.Arg572Cys
  • NP_001305781.1:p.Arg579Cys
  • NP_055948.2:p.Arg578Cys
  • NC_000016.9:g.1812844C>T
  • NM_001040439.1:c.1714C>T
  • NM_001318852.1:c.1735C>T
  • NM_015133.4:c.1732C>T
  • p.Arg578Cys
Protein change:
R572C; ARG578CYS
Links:
OMIM: 605431.0004; dbSNP: rs1567203083
NCBI 1000 Genomes Browser:
rs1567203083
Molecular consequence:
  • NM_001040439.2:c.1714C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001318852.2:c.1735C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015133.5:c.1732C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001792419GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(Nov 17, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001792419.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Published functional studies demonstrate a damaging effect suggesting adverse effect on the developing axon (Iwasawa et al., 2019); Not observed in large population cohorts (Lek et al., 2016); This variant is associated with the following publications: (PMID: 30945334, 30612693)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 20, 2024