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NM_015915.5(ATL1):c.488T>C (p.Val163Ala) AND not provided

Germline classification:
Likely pathogenic (2 submissions)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001580004.3

Allele description [Variation Report for NM_015915.5(ATL1):c.488T>C (p.Val163Ala)]

NM_015915.5(ATL1):c.488T>C (p.Val163Ala)

Gene:
ATL1:atlastin GTPase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q22.1
Genomic location:
Preferred name:
NM_015915.5(ATL1):c.488T>C (p.Val163Ala)
HGVS:
  • NC_000014.9:g.50591605T>C
  • NG_009028.1:g.63524T>C
  • NM_001127713.1:c.488T>C
  • NM_015915.4:c.488T>C
  • NM_015915.5:c.488T>CMANE SELECT
  • NM_181598.4:c.488T>C
  • NP_001121185.1:p.Val163Ala
  • NP_056999.2:p.Val163Ala
  • NP_853629.2:p.Val163Ala
  • LRG_360t1:c.488T>C
  • LRG_360t2:c.488T>C
  • LRG_360:g.63524T>C
  • LRG_360p2:p.Val163Ala
  • NC_000014.8:g.51058323T>C
Protein change:
V163A
Links:
dbSNP: rs1595600383
NCBI 1000 Genomes Browser:
rs1595600383
Molecular consequence:
  • NM_001127713.1:c.488T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015915.5:c.488T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_181598.4:c.488T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001809322Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus
no assertion criteria provided
Likely pathogenicgermlineclinical testing

SCV001954262Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely pathogenicgermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus, SCV001809322.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus, SCV001954262.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 16, 2023