NM_001844.5(COL2A1):c.3896G>A (p.Trp1299Ter) AND Stickler syndrome type 1

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Jun 4, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001591924.1

Allele description [Variation Report for NM_001844.5(COL2A1):c.3896G>A (p.Trp1299Ter)]

NM_001844.5(COL2A1):c.3896G>A (p.Trp1299Ter)

Gene:

COL2A1:collagen type II alpha 1 chain [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12q13.11

Genomic location:

Preferred name:

NM_001844.5(COL2A1):c.3896G>A (p.Trp1299Ter)

HGVS:

NC_000012.12:g.47974853C>T
NG_008072.1:g.34650G>A
NM_001844.5:c.3896G>AMANE SELECT
NM_033150.3:c.3689G>A
NP_001835.3:p.Trp1299Ter
NP_149162.2:p.Trp1230Ter
NC_000012.11:g.48368636C>T
NM_001844.4:c.3896G>A

Protein change:

W1230*

Links:

dbSNP: rs2136508909

NCBI 1000 Genomes Browser:

rs2136508909

Molecular consequence:

NM_001844.5:c.3896G>A - nonsense - [Sequence Ontology: SO:0001587]
NM_033150.3:c.3689G>A - nonsense - [Sequence Ontology: SO:0001587]

Observations:

Condition(s)

Name:: Stickler syndrome type 1 (STL1)
Synonyms:: Stickler syndrome, vitreous type 1; Stickler syndrome, membranous vitreous type; Arthroophthalmopathy, hereditary progressive
Identifiers:: MONDO: MONDO:0007160; MedGen: C2020284; Orphanet: 828; OMIM: 108300

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001816086	DBGen Ocular Genomics	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Jun 4, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001816086

DBGen Ocular Genomics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Jun 4, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
unspecified	germline	yes	1	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From DBGen Ocular Genomics, SCV001816086.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	unspecified	1	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		1	not provided	not provided	not provided

Last Updated: Mar 10, 2024

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