U.S. flag

An official website of the United States government

NM_001193424.2(SUV39H2):c.850-305C>T AND Histiocytic medullary reticulosis

Germline classification:
Benign (1 submission)
Last evaluated:
Jul 30, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001661373.11

Allele description [Variation Report for NM_001193424.2(SUV39H2):c.850-305C>T]

NM_001193424.2(SUV39H2):c.850-305C>T

Genes:
DCLRE1C:DNA cross-link repair 1C [Gene - OMIM - HGNC]
SUV39H2:SUV39H2 histone lysine methyltransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10p13
Genomic location:
Preferred name:
NM_001193424.2(SUV39H2):c.850-305C>T
HGVS:
  • NC_000010.11:g.14899234C>T
  • NM_001193424.2:c.850-305C>TMANE SELECT
  • NM_001193425.2:c.670-305C>T
  • NM_001193426.2:c.310-305C>T
  • NM_001193427.2:c.130-305C>T
  • NM_001350965.2:c.*16G>A
  • NM_001350966.2:c.*16G>A
  • NM_001350967.2:c.*16G>A
  • NM_024670.4:c.670-305C>T
  • NC_000010.10:g.14941233C>T
  • NM_001350965.1:c.*16G>A
  • NR_146960.1:n.2228G>A
Links:
dbSNP: rs60006238
NCBI 1000 Genomes Browser:
rs60006238
Molecular consequence:
  • NM_001350965.2:c.*16G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001350966.2:c.*16G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001350967.2:c.*16G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001193424.2:c.850-305C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001193425.2:c.670-305C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001193426.2:c.310-305C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001193427.2:c.130-305C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_024670.4:c.670-305C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NR_146960.1:n.2228G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Histiocytic medullary reticulosis
Synonyms:
Omenn syndrome; Reticuloendotheliosis familial with eosinophilia; Severe combined immunodeficiency with hypereosinophilia
Identifiers:
MONDO: MONDO:0011338; MedGen: C2700553; Orphanet: 39041; OMIM: 603554

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001876572Genome-Nilou Lab
criteria provided, single submitter

(ACMG Guidelines, 2015)		Benign
(Jul 30, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenonot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Genome-Nilou Lab, SCV001876572.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenonot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024